Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0034
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0787 + 24598823-24598973,24600213-24600534,24602499-24602808     29   3.9  
03_06_0278 - 32817707-32819167                                         28   6.9  
01_06_0742 - 31611005-31611843,31611930-31612092,31613463-316135...    28   9.1  

>06_03_0787 + 24598823-24598973,24600213-24600534,24602499-24602808
          Length = 260

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 262 PNVGLPQVRGGEIDFAPQGHLE-SEAGYLRIA 170
           PN+GL    GG  +F P+ H E SEA +LR+A
Sbjct: 115 PNLGLSDDYGGWCNF-PKEHFEMSEAAFLRVA 145


>03_06_0278 - 32817707-32819167
          Length = 486

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 293 PWQWSEHVXSPKCWVTSSTR 234
           PW+W     S  CW+ +STR
Sbjct: 42  PWRWRWLCRSGSCWIDASTR 61


>01_06_0742 -
           31611005-31611843,31611930-31612092,31613463-31613538,
           31613615-31613731,31613852-31614016,31614100-31614190,
           31614824-31614908,31615013-31615195,31615748-31615996
          Length = 655

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 271 CXHPNVGLPQVRGGEIDFAPQGHLESEAG 185
           C  P V LP+ RG  + + PQGHL S AG
Sbjct: 30  CAGPVVSLPR-RGSAVVYLPQGHL-SAAG 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,967,708
Number of Sequences: 37544
Number of extensions: 269154
Number of successful extensions: 591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)