Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0011
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    34   0.10 
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417...    29   3.9  
04_04_0338 + 24509698-24510042,24510373-24510490,24510539-245106...    29   5.2  
01_01_0355 + 2810340-2813112,2813213-2813637                           28   6.9  
06_01_0475 + 3375757-3375800,3375898-3376168,3376252-3376440,337...    28   9.1  
06_01_0364 + 2591861-2593285                                           28   9.1  

>02_01_0246 +
           1617326-1617367,1618903-1624419,1625040-1625498,
           1625603-1625887,1626016-1626030,1626339-1626419,
           1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
 Frame = +2

Query: 17  ESEIVKTD--APTITEVHQKESDKKPDDTQPSKISFSTQDSINSDIYSSNESTVTNGL-- 184
           + EI KTD       +    +S K+  + QP+ ++    D + ++  +  +S +   +  
Sbjct: 171 QEEICKTDDAIEQTVDAQDLDSSKESKEAQPAIMTDIPADEVLAEAPAGIQSPLEPNVGD 230

Query: 185 -PTAPSVTTTKAPIIEEEDTSLFDHNPAFPPIPDDLAVLSNHGDEIV 322
             T P    T  P  +E+DT+  DH  +F   P+D  V++ H DE V
Sbjct: 231 SDTVPGNKETDDPA-KEDDTAYLDHKESF---PED-KVIAEHADEEV 272


>03_05_0520 +
           25139314-25139364,25139580-25139711,25141594-25141731,
           25143191-25143241,25143662-25143751,25143854-25144000,
           25144108-25144218,25144307-25144375,25144777-25145517,
           25145840-25146004,25146376-25146442,25146580-25146704,
           25148714-25148983,25149065-25149199,25149316-25149497,
           25149669-25149744
          Length = 849

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 98  QPSKISFSTQDSINSDIYSSNESTVTNGLPTAPSVTT 208
           QP ++   T D+I+SD  ++NESTV  G   +P V +
Sbjct: 457 QPQQV-LRTTDTISSDSSNTNESTVLGGRIFSPPVVS 492


>04_04_0338 +
           24509698-24510042,24510373-24510490,24510539-24510642,
           24510823-24511491
          Length = 411

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 583 WSVEYLSWYSGPQIKHWAFFELFYNCSAFLFSCCTSFD 470
           W V  L W +GP +    F  + Y CS  L  C  + D
Sbjct: 57  WGVAQLGWVAGPAVM-LLFGAVIYCCSVLLVECYRTGD 93


>01_01_0355 + 2810340-2813112,2813213-2813637
          Length = 1065

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 542 NLRSAIPTEILNAPSLVPADTG-EPLDDGITTDV 640
           NL  A+P+ + N  SL+  D G   LD  I TD+
Sbjct: 232 NLSGALPSSLYNLSSLMGFDAGNNKLDGSIATDI 265


>06_01_0475 +
           3375757-3375800,3375898-3376168,3376252-3376440,
           3376816-3376989,3378039-3378218,3378565-3378719,
           3379509-3379599,3380023-3380186,3380791-3380845,
           3380944-3381066,3381160-3381255,3381706-3381833,
           3382407-3382466,3382607-3382896,3383127-3383237,
           3383318-3383395,3383487-3383659,3384192-3384296,
           3385017-3385112
          Length = 860

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 15/77 (19%)
 Frame = +2

Query: 92  DTQPSKISFSTQDSINSDIYSSNESTVTNGLPTA-----PSVTTTK-APIIEE------- 232
           DT  +  + S    I  D+ S   S V NG PT      P    TK AP+  +       
Sbjct: 669 DTSTAGGAPSASTDILMDLLSIGSSPVQNGPPTVSNFSLPGQAETKVAPVTPQVVDLLDG 728

Query: 233 --EDTSLFDHNPAFPPI 277
               TSL D N A+PPI
Sbjct: 729 LSSSTSLSDENTAYPPI 745


>06_01_0364 + 2591861-2593285
          Length = 474

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = -1

Query: 378 KLGTVSCTVMWSPSADGS----GTISSPWLLKTAKSSG 277
           +LG+ S TV+ SP+ DGS    GT   P LL+  +++G
Sbjct: 411 RLGSASATVVPSPAGDGSWFFAGTRLWPRLLEVVEAAG 448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,481,662
Number of Sequences: 37544
Number of extensions: 317388
Number of successful extensions: 1057
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)