Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0006
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0204 + 19246633-19246938,19247091-19247192,19247314-192474...    28   2.9  
04_04_1596 + 34684943-34686340,34688085-34688175,34688290-346883...    27   5.1  
12_02_1195 + 26906814-26907121,26907771-26907992,26908913-269091...    27   6.7  
08_02_0885 + 22268287-22268988                                         27   6.7  
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256...    26   8.9  
05_03_0203 - 9883200-9883304,9883397-9883955,9884767-9884896,988...    26   8.9  

>01_05_0204 +
           19246633-19246938,19247091-19247192,19247314-19247431,
           19247977-19247996,19248122-19248160,19248282-19248342,
           19248464-19248664,19248756-19249057,19249448-19249601,
           19249683-19249939,19250015-19250045,19251027-19251166,
           19252067-19252177,19253071-19253283
          Length = 684

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 219 VSPLIQQTSRSRDED-EPGLLSYSLYIFQPC 130
           V PL  QT+   DE    GLLSY+L ++  C
Sbjct: 220 VDPLYHQTTAQFDEGGAKGLLSYNLGVYDSC 250


>04_04_1596 +
           34684943-34686340,34688085-34688175,34688290-34688354,
           34688530-34688581,34688747-34688829,34688942-34689035,
           34689468-34690051
          Length = 788

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 53  HTIDTQIKPKKHGWQATIDTQIKPKKHG*KMYSE*DRRPGSSSSLL 190
           H  DT    KK  +++ I+ +I+ KK G K  +     PGSSS +L
Sbjct: 530 HLFDTT--EKKLQYKSQIELRIRKKKSGQKKITGFQFAPGSSSEVL 573


>12_02_1195 +
           26906814-26907121,26907771-26907992,26908913-26909153,
           26909512-26909642,26910336-26910474,26910600-26910810,
           26911371-26911759
          Length = 546

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 171 PGLLSYSLYIFQPCFFGFICVSI 103
           P  ++Y   +FQP FF F  VSI
Sbjct: 233 PSYMAYVPILFQPAFFSFPLVSI 255


>08_02_0885 + 22268287-22268988
          Length = 233

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 385 FFFFFFILCTDPQ*GCKMAIK 323
           F+FFFF+LC      C M +K
Sbjct: 22  FYFFFFLLCLTMTHNCVMYLK 42


>05_06_0026 -
           25024807-25025300,25025432-25025495,25025567-25025662,
           25025719-25025929,25026616-25026690,25026820-25027037
          Length = 385

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 159 SYSLYIFQPCFFGF-ICVSIVACQPCF 82
           S  L ++ PCF G   C     CQPCF
Sbjct: 93  SRCLKLYCPCFAGGGYCSEKCGCQPCF 119


>05_03_0203 -
           9883200-9883304,9883397-9883955,9884767-9884896,
           9884936-9884994,9885389-9885456
          Length = 306

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 44  PTEHTIDTQIKPKKHGWQATIDTQIKP 124
           P++++ D +I+PKK   Q   DTQ+ P
Sbjct: 52  PSDNSADKEIQPKKALPQEYCDTQLPP 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,103,004
Number of Sequences: 37544
Number of extensions: 153444
Number of successful extensions: 335
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)