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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0001
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0316 + 16684100-16684339,16684425-16685132,16685241-166859...    29   1.8  
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    29   1.8  
03_04_0062 + 16965323-16966024                                         28   2.4  
02_05_1160 + 34580680-34582659                                         28   3.1  
03_06_0568 - 34778408-34778710,34779340-34779411,34779549-347796...    27   5.5  
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34...    27   5.5  
02_04_0538 + 23739830-23740126,23740205-23740261,23740344-237404...    27   5.5  
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424...    27   7.2  
01_03_0278 - 14509481-14509506,14510700-14512291,14512547-145126...    27   7.2  
10_06_0162 - 11348250-11349531,11349571-11349671                       26   9.5  
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119...    26   9.5  
03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509           26   9.5  
02_01_0748 + 5566073-5567620                                           26   9.5  

>07_03_0316 +
           16684100-16684339,16684425-16685132,16685241-16685939,
           16685992-16686053,16686096-16686368,16686622-16686873,
           16686954-16687064,16687152-16687212,16687312-16687404,
           16687482-16687667
          Length = 894

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +3

Query: 96  HGSEEGRSVILHQFIPLDLALQKFILQTLEGELSQAGIFFDDQFDEREI*G--YFRRSAI 269
           HGSE  R +  H     D   +KF++   +G+  +A +  DD     E+ G  YF     
Sbjct: 577 HGSEVPRVLRSHDSKSKDENKEKFMVTVFKGDKERAKLRDDDPQKAAELAGPTYFTTHDC 636

Query: 270 HSRRDHGQGV 299
             + +HG+ +
Sbjct: 637 PEKYEHGKAL 646


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -3

Query: 251 ITSNFSFVKLIVEEDSCLAKLALQGLKYEFLKSEVEGNELMEDNRSSFFRPM 96
           I S  S ++   EEDS LA+ A+QG+K E+  S+ E   ++     S F+ +
Sbjct: 846 IQSRSSMIRCSEEEDSRLAEDAMQGMK-EWKSSDSERQGIVLAIEKSIFKDL 896


>03_04_0062 + 16965323-16966024
          Length = 233

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 91 SAGPVVWRGARYAPSHPTNRETSLV 17
          +AGP  W   +Y P   TN + S++
Sbjct: 14 AAGPTAWSSQKYRPGFATNAQRSII 38


>02_05_1160 + 34580680-34582659
          Length = 659

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 112 PSSDPCRSAGPVVWRGARYAPSHP 41
           P+  PC+  G +V + +RY P HP
Sbjct: 193 PNPGPCQGNGGMVVKISRYGPPHP 216


>03_06_0568 -
           34778408-34778710,34779340-34779411,34779549-34779635,
           34779722-34779880,34780641-34780739,34780823-34780903,
           34781007-34781461,34781550-34781679,34781952-34782743
          Length = 725

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 213 FDDQFDEREI*GYFRRSAIHSRRDHGQGVEQHG 311
           +DD+    E+  YFRR    S++  G G+ + G
Sbjct: 497 YDDELRREELLNYFRRFQSASQKKGGSGIFRQG 529


>03_01_0038 -
           340564-341108,341214-341463,341546-341649,341728-343255,
           343995-344056,344578-344728
          Length = 879

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 205 ESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVV 315
           E  + +NL  E  E+I+D  +F  DE+  + +N+ ++
Sbjct: 843 EDGTWMNLQLESEEIIVDTWEFILDELLEEVANDLLI 879


>02_04_0538 +
           23739830-23740126,23740205-23740261,23740344-23740441,
           23740565-23740640,23741316-23741345,23741833-23741961,
           23742077-23742123,23742477-23742531,23742939-23743038,
           23743568-23743674,23743760-23743906,23744232-23744378,
           23744473-23744526,23744873-23744914
          Length = 461

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 261 SAIHSRRDHGQGVEQHGCRRRQARGETGRARL 356
           +A   RRD G G    GCRRR+A+G+   A L
Sbjct: 65  AAASCRRDGGCG--GCGCRRRRAKGKPAAAEL 94


>04_04_1574 -
           34536744-34537136,34541247-34541405,34541497-34542411,
           34543642-34543731,34544324-34544390,34544483-34544676,
           34544770-34545510,34545596-34545661,34545783-34545908,
           34545978-34546073,34546153-34546521,34546602-34546724,
           34546802-34546906,34547394-34547531,34547665-34547760,
           34548018-34548275
          Length = 1311

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 10  SIVPMMFRDWWDDWERIERPSRLLDQHFGMG 102
           ++ P  +R W  D+E I R   +L QH GMG
Sbjct: 872 TLTPYRWR-WLRDYEFITRVDAVLRQHSGMG 901


>01_03_0278 -
           14509481-14509506,14510700-14512291,14512547-14512638,
           14513030-14514412
          Length = 1030

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 28  FRDWWDDWERIERPS 72
           F+ WWD  ER E+PS
Sbjct: 652 FKGWWDKTERQEQPS 666


>10_06_0162 - 11348250-11349531,11349571-11349671
          Length = 460

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 127 RITDRPSSDPCRSAGPVVWRGARYAPSHP 41
           R   RP+ DP   A PV+ R A     HP
Sbjct: 27  RFRRRPAVDPAAPAAPVLRRTAELLRGHP 55


>03_03_0042 +
           14009649-14009866,14011342-14011419,14011791-14011955,
           14012071-14012138,14012219-14012258,14013579-14013690,
           14013859-14013942
          Length = 254

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +1

Query: 178 PWRASLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGF 357
           P  A++A+QE +  +   +E   V  +  + TP E+ ++   +   ++G H  +      
Sbjct: 112 PEDAAVAKQELNHQVIGGREISIVFAEENRKTPQEMRMRTRTSGRYMDGSHRRRSVSRSP 171

Query: 358 ISR--QFTPPVHPADR 399
            SR   ++P   PA R
Sbjct: 172 RSRYHSYSPSPSPARR 187


>03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509
          Length = 332

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 51  GAYRAPLQTTGPALRHGS 104
           GA  APL TTG AL HG+
Sbjct: 44  GAGTAPLSTTGFALAHGA 61


>02_01_0748 + 5566073-5567620
          Length = 515

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 126 G*QIVLLQTHAEVLVQ*SGGALDTLPVIPPIAKHHWYY 13
           G ++++   HAE +   +  A DT+ + PP    +W +
Sbjct: 321 GSKVIVTSRHAEHVAGLAAAAADTITLRPPPPAEYWLF 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,310,999
Number of Sequences: 37544
Number of extensions: 180627
Number of successful extensions: 660
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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