Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0106
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    59   3e-09
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    58   6e-09
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956...    31   1.0  
10_01_0085 + 1061962-1062141,1062283-1062431,1062734-1062819,106...    30   1.4  
03_05_0161 + 21400580-21401695                                         30   1.8  
03_06_0548 - 34660096-34660499,34660630-34660726                       29   3.2  
03_05_0461 + 24549079-24550464                                         27   9.7  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 32/62 (51%), Positives = 41/62 (66%)
 Frame = +2

Query: 32  LPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 211
           +PF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  
Sbjct: 1   MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDI 58

Query: 212 RL 217
           ++
Sbjct: 59  KI 60



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 22/60 (36%), Positives = 34/60 (56%)
 Frame = +1

Query: 253 EAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKXKA 432
           +A  +A +  KW  S W +KL  +++RA + D+DRFK+  A++KR  A       LK  A
Sbjct: 73  KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKTA 132


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 32/61 (52%), Positives = 40/61 (65%)
 Frame = +2

Query: 35  PFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFR 214
           PF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  +
Sbjct: 15  PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIK 72

Query: 215 L 217
           +
Sbjct: 73  I 73



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 17/44 (38%), Positives = 29/44 (65%)
 Frame = +1

Query: 253 EAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 384
           +A  +A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 86  KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>04_04_1641 +
           34993807-34994589,34994924-34995022,34995521-34995648,
           34996095-34996235,34996456-34996542,34996627-34996780,
           34998569-34998628,34999019-34999447,34999524-34999819,
           35000278-35000407,35000690-35001187
          Length = 934

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -2

Query: 156 PGPSTSARVWSITSTTLTNFPFKGPSATRATRPGSTYRAKGKTFLXR--LWCR 4
           P P T  +    T+TT T  P   P A    R    +R KGK F+    LW R
Sbjct: 80  PPPETLEQPEPSTTTTTTTPPPPEPEAEAEARRQEEFRHKGKVFVGNLPLWAR 132


>10_01_0085 +
           1061962-1062141,1062283-1062431,1062734-1062819,
           1062986-1063113,1063213-1063341,1063428-1063495,
           1063575-1063812
          Length = 325

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 565 CLSHITCRRHXTYYFLAGFWSPSWCALFSQ 476
           CL HI+ R     YF +G  S +W  +F Q
Sbjct: 238 CLEHISSRNSPIQYFTSGGGSKAWRGIFQQ 267


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 195 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 100
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


>03_06_0548 - 34660096-34660499,34660630-34660726
          Length = 166

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 392 VPGLPYSRA*RXRLSVLXPSARKISLKRLRKKCAPRRRPKT 514
           VPG+P +R  R R     P AR    +R R++C  RRR  T
Sbjct: 111 VPGVPRARRPRLR-----PQARMAPQRRARRRCRRRRRRGT 146


>03_05_0461 + 24549079-24550464
          Length = 461

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 446 PSARKISLKRLRKKCAPRRRPK 511
           P  +   L+R R++ APRRRP+
Sbjct: 283 PEVQLFRLRRWRRRAAPRRRPR 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,737,704
Number of Sequences: 37544
Number of extensions: 302091
Number of successful extensions: 881
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)