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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0105
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1809 - 40029628-40030539                                         34   0.12 
09_04_0651 - 19224403-19225032                                         31   0.81 
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067     29   2.5  
01_02_0099 + 11092529-11093140,11094153-11094424,11095378-110954...    29   3.3  
08_02_0421 - 16932354-16932427,16932909-16933076,16933443-16934544     29   4.3  
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105           28   5.7  
08_02_1334 - 26224546-26225337                                         28   7.6  
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653...    28   7.6  
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33...    28   7.6  

>01_06_1809 - 40029628-40030539
          Length = 303

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 351 HKLLPKIMIGHTSCTICTRDLKISKCPCPL 440
           HK    I  GHT C +C+R+L +S+  CPL
Sbjct: 262 HKGAAFIPCGHTFCRLCSRELWVSRGNCPL 291


>09_04_0651 - 19224403-19225032
          Length = 209

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 369 IMIGHTSCTICTRDLKISKCPCPL 440
           I  GHT C  C R+L++ +  CPL
Sbjct: 174 IPCGHTFCRACARELRVGRGRCPL 197


>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
          Length = 1064

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 532 HGQHAPGSGVQNTHIQYTQLHHAAPQVGMMNPAQDGLAPPSG 657
           H  H PG+   NT   Y+ + H   ++G +       APP G
Sbjct: 388 HHHHHPGADHHNTASSYSPVEHMVAELGRLLGDLRASAPPRG 429


>01_02_0099 +
           11092529-11093140,11094153-11094424,11095378-11095438,
           11095553-11095622,11095645-11095901,11096466-11096639
          Length = 481

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 171 VQLSAIINEVQAKKRGAASVERIAESTWPARG 76
           +Q SA+ N + A + G A VE + E+ W ARG
Sbjct: 232 IQASAV-NWLAAMEGGGAGVEGVKETAWSARG 262


>08_02_0421 - 16932354-16932427,16932909-16933076,16933443-16934544
          Length = 447

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
 Frame = -3

Query: 650 GGAKPSCAGFIMPTCGAAWCNCVY*ICVFWTPDPGACCPCIKG------ISNSCHQMKEC 489
           G    SCA        +  C   + +C+  +  PG  C C  G      +   C  + EC
Sbjct: 313 GSGSGSCAAASRTPLPSYACRSAHSVCIDSSNGPGYICNCTAGYHGNPYVVGDCTDINEC 372

Query: 488 EMSD 477
           E  D
Sbjct: 373 EHKD 376


>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
          Length = 430

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 317 FEFCARIGMECPQTASENHDRSYKLY-NMYKRPENLEVPLSATRD 448
           + F A      PQ  + N  R Y  Y N Y  P +L+VPL A  D
Sbjct: 53  YVFAAATPYPPPQYTNPNLPRYYPQYGNYYPPPPSLQVPLPAPYD 97


>08_02_1334 - 26224546-26225337
          Length = 263

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 369 IMIGHTSCTICTRDLKISKCPCPL 440
           I  GHT C  C R+L   +  CPL
Sbjct: 228 IPCGHTFCRTCARELLAGRGRCPL 251


>02_04_0640 -
           24664841-24664855,24664895-24664978,24665232-24665319,
           24665457-24667318
          Length = 682

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 303 DRHNFSSSVHELEWSVHKLLPKIMIGHTSCTI 398
           D +N SS+V         L+P  ++ HT CT+
Sbjct: 286 DTYNISSNVRGTRPDYRSLVPSSILNHTICTV 317


>01_01_0047 +
           334809-334877,334966-335074,335159-335299,336337-336498,
           336577-336734,337180-337310,337385-337472,337587-337690,
           338346-338444,339060-339116,339262-339337,339519-339602,
           339969-340010,340128-340198,341516-341564,342370-342441,
           343149-343286,343393-343473,344166-344353,344591-345188,
           345274-345342,346729-346854,347048-347175,347986-348142,
           348342-348388,348472-348535,348691-348765,349292-349414,
           349797-349982,351179-351303,351390-351459,351974-352101,
           352585-352726,353065-353163,353239-353285,353598-353652,
           353758-353967,354686-354757,354836-354905,355231-355414,
           355521-355644,355732-355863,356252-356317,356805-356852,
           357572-357676,357728-357865,358097-358399,358482-358594,
           359082-359148,359236-359310,359395-359517,359610-359618,
           360156-360320,360401-360502,361545-361696,361794-361995,
           362079-362126,362215-362298,362613-362657,363302-363385,
           363890-363970,364044-364133,364217-364279,364824-364841,
           365238-365378,365494-365550,366091-366185,366275-366383,
           367067-367156,367308-367387,367480-367558,367742-367903,
           368005-368136,368335-368469,368553-368618,369317-369457,
           369575-369648,369685-369910
          Length = 2905

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 207 SLCCLLRQRDY*VQLSAIINEVQAKKRGAASV 112
           S+CCL+ +  Y V  S +IN  +A  +G  SV
Sbjct: 324 SICCLIHKYGYRVDKSLLINWFKATCKGLKSV 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,269,434
Number of Sequences: 37544
Number of extensions: 407686
Number of successful extensions: 1140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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