Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0098
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0175 - 15353903-15354005,15354189-15354280,15354408-153545...    29   3.2  

>09_04_0175 -
           15353903-15354005,15354189-15354280,15354408-15354553,
           15354661-15354814,15354885-15354985,15355055-15355145,
           15355146-15355378,15355501-15355736,15355839-15356066,
           15356150-15356370,15356869-15356990,15357125-15357451,
           15357616-15357754,15357822-15357901,15358478-15358678,
           15359431-15359757,15360144-15360897
          Length = 1184

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 211 NCKLAPL*QKFYLNKFIILLYSSHER*GRDIFKYGPIDGEFGNL 80
           N  LAP+  KF+   + +L  S+ +R G+D+   G ++   G L
Sbjct: 750 NVSLAPMPMKFHQTSYDVLSISTGDRYGKDLIFNGTVEAINGAL 793


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,042,372
Number of Sequences: 37544
Number of extensions: 209332
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)