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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0082
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0484 - 3643294-3643478,3644282-3644555,3644646-3645018,364...    29   2.5  

>07_01_0484 -
           3643294-3643478,3644282-3644555,3644646-3645018,
           3645177-3645233,3646034-3646458
          Length = 437

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 451 LVPSAEASRYFATLLEIHTQSDVIYCTSNLHEHQFMLILTKR 326
           LVP ++   +F TLL+ H   DV+        H   L+L  R
Sbjct: 205 LVPDSDIGYHFGTLLDNHEGVDVVLSVGGERFHAHKLVLAAR 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,092,185
Number of Sequences: 37544
Number of extensions: 274049
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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