Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0054
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0681 - 24242485-24242560,24242721-24242785,24242874-242430...    49   4e-06
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506...    28   7.6  

>01_05_0681 -
           24242485-24242560,24242721-24242785,24242874-24243029,
           24243073-24243121,24243291-24243366,24243456-24243666,
           24244038-24244160,24244245-24244363,24244439-24244532,
           24245123-24245233,24245336-24245392
          Length = 378

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 21/47 (44%), Positives = 32/47 (68%)
 Frame = +1

Query: 259 KEILQLMSFPSEYSFPKTVTRKQCYRLLGNSVNVKVISELLQILFDE 399
           +E+  L SFPS + FP  ++ +Q Y +LGNS++V V+  LL+ LF E
Sbjct: 331 REVANLHSFPSSFHFPNHISLRQQYAMLGNSLSVAVVGPLLRYLFAE 377


>02_03_0141 - 15649188-15649274,15649376-15649421,15650476-15650606,
            15652168-15652254,15652470-15652538,15652699-15652845,
            15652923-15653003,15653122-15653223,15653392-15653429,
            15653590-15653692,15653766-15653888,15654872-15654951,
            15655356-15655504,15657794-15658010,15658379-15658448,
            15659167-15659313,15659430-15659486,15663270-15663436,
            15663479-15663569,15664044-15665081,15665580-15665695,
            15666104-15667039,15667108-15667170,15667416-15667970,
            15668293-15668305
          Length = 1570

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 637  VISLNVEHVTCTPCAYDSTLT 575
            +  +N+EH+ C PC Y   +T
Sbjct: 1384 ISGINMEHILCPPCRYQMGIT 1404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,508,786
Number of Sequences: 37544
Number of extensions: 220771
Number of successful extensions: 327
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)