Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0023
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    54   1e-07
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656...    29   4.4  
06_03_0905 + 25843547-25844314                                         28   5.8  
07_03_1257 - 25241194-25242018                                         28   7.6  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 27/60 (45%), Positives = 38/60 (63%)
 Frame = -2

Query: 446 KKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDG 267
           KK +  ++K Y+K L AKL+    ++ E FK N+    K +LG+ K+LQFF GESM  DG
Sbjct: 84  KKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDG 140


>01_05_0142 -
           18564697-18564792,18564824-18564928,18565606-18565678,
           18566262-18567637
          Length = 549

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
 Frame = +3

Query: 159 ISYLTFRISLLLDH-V*KTS*LVFAYHQSLYIPHGNHAITIHRLPSKEL----KFLKPAE 323
           IS+LT +++  L++ +      +   H+     H  H   ++  PSK+L    ++L+   
Sbjct: 214 ISFLTDKVAQSLENFIQYHPRAIQEAHRPKDFHHMLHLFQMYLKPSKKLVEGSQYLERGR 273

Query: 324 DVFHYFVHVCFKYFNLVRRL 383
             FH F ++C++Y  + R+L
Sbjct: 274 -YFHSFANICYRYLKIGRKL 292


>06_03_0905 + 25843547-25844314
          Length = 255

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 504 STPSPCPRQPLQPKD*NPRSGYHPVLSSPTYR 599
           S PSP P  P  PK+  PR    P   SP  R
Sbjct: 44  SHPSPSPGHPKGPKNPTPRPPKGPTYPSPVTR 75


>07_03_1257 - 25241194-25242018
          Length = 274

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 450 PKAYVSTSLWFRTMSTPLSTPSPCPRQPLQPKD*NPRSGYHPVLSSPTYRSLR 608
           P   V T+        P ++PSP    PLQP+  +PR    P+  +  +RSL+
Sbjct: 2   PPVTVVTATAAAAAECPATSPSPSSPPPLQPRPRSPR----PMPQAVRHRSLQ 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,052,063
Number of Sequences: 37544
Number of extensions: 332803
Number of successful extensions: 929
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)