Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b06
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224           31   0.80 
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498...    30   1.8  
09_04_0598 + 18875270-18875437,18875547-18876179                       29   2.4  
08_02_1288 + 25902264-25902431,25902506-25903090                       28   7.4  
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136...    27   9.8  

>02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224
          Length = 508

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 105 LFSTS*SCTS*YRPIRRPERQLLLRRISDCDARSWKSAPTF 227
           +F     CT    P RRP  Q +LRR+  C AR W+  P F
Sbjct: 469 VFKLGVECTM-MDPQRRPSMQTVLRRLRQC-ARWWRRFPCF 507


>03_06_0565 +
           34747278-34748066,34748170-34748406,34749777-34749869,
           34751752-34751988,34752398-34752584,34752956-34753028,
           34753145-34753289,34753670-34753779,34754127-34754258,
           34754328-34754469,34754545-34754679,34756278-34756435,
           34757327-34757401,34757505-34757643,34757838-34757952,
           34758016-34758107,34758500-34758613
          Length = 990

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 199 PDPGSLPLLSQTPSLVVKCDQEGD 270
           P+P S P+LS  PS++ +C Q  D
Sbjct: 290 PEPFSRPILSANPSIIARCLQPSD 313


>09_04_0598 + 18875270-18875437,18875547-18876179
          Length = 266

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -3

Query: 251 LTTRLGV*ESRGRLPGSGVTVGNPPQEQLPFRSSNGAILTGTTSASRK*LIPTNMRMQMS 72
           L T  G+  +  RL    +T  N  +  L  +S    I+  T  A+   L  T +   +S
Sbjct: 36  LRTAAGINSATRRLWAISMTKDNEKKAVLVVQSLRNVIMGSTLVATTAILFCTGIAAVLS 95

Query: 71  QKYTLKEPI 45
             YT+K+P+
Sbjct: 96  STYTIKKPL 104


>08_02_1288 + 25902264-25902431,25902506-25903090
          Length = 250

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -3

Query: 251 LTTRLGV*ESRGRLPGSGVTVGNPPQEQLPFRSSNGAILTGTTSASRK*LIPTNMRMQMS 72
           L++ +G+  +  RL   G+   N  +  L  +S    I+  T  A+   L  T +   +S
Sbjct: 36  LSSTVGINTATRRLWVLGMMKDNEKKAVLVVQSMRNVIMGSTLMATTAILFCTGVAAILS 95

Query: 71  QKYTLKEPI 45
             YT+K+P+
Sbjct: 96  STYTVKKPL 104


>04_03_0611 -
           18011469-18012563,18012756-18012920,18013542-18013639,
           18014541-18015498
          Length = 771

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/79 (25%), Positives = 34/79 (43%)
 Frame = +1

Query: 46  MGSLRVYFCDICILMLVGINYFLLAEVVPVSIAPFEDRKGNCSCGGFPTVTPDPGSLPLL 225
           + S+   F D   L+++ ++  L AE +  + A     +    CGG   V P   S    
Sbjct: 9   VASICAAFYDSIWLLVLLLSTALAAETLDGAQAASSQCQNATKCGGVDIVYPFGLSSSGC 68

Query: 226 SQTPSLVVKCDQEGDNTCK 282
           + +PS  V C+  G+   K
Sbjct: 69  AMSPSFEVDCNNTGNGVQK 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,916,030
Number of Sequences: 37544
Number of extensions: 318938
Number of successful extensions: 837
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)