Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a20
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0646 + 18363847-18364858,18365501-18365578,18366161-18366798     28   5.2  
03_01_0469 - 3613062-3613745,3613952-3614512,3614600-3614690,361...    27   9.1  

>04_03_0646 + 18363847-18364858,18365501-18365578,18366161-18366798
          Length = 575

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 106 ERINKRISSTSLSYDSGDEANDTRVPYEQKSDEGNILDEIFTIV 237
           ER+ +    T  S+   DE  +T   YE   +E +++DE+  IV
Sbjct: 323 ERLKEIEKLTLTSWKETDEIENTNEEYESTDEELDLIDELAEIV 366


>03_01_0469 -
           3613062-3613745,3613952-3614512,3614600-3614690,
           3614782-3614870,3614962-3615027,3615309-3615423,
           3615521-3615966
          Length = 683

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 3   YWKENIDLIEHNGRNIRYYYLHAL 74
           +W E ID     G N+ YYY H L
Sbjct: 205 HWLEAIDPRHRYGHNLHYYYQHWL 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,006
Number of Sequences: 37544
Number of extensions: 271046
Number of successful extensions: 734
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)