Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a09
         (327 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875           28   2.0  
04_04_0895 - 29168107-29168229,29168617-29170068                       27   4.6  
05_06_0202 - 26339467-26339494,26339579-26339624,26339742-263397...    26   8.0  

>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
          Length = 356

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 219 SSCSTCKW*CTESRGRSMGRSKNRR 145
           +SC  CK  C  S GRS  R++ RR
Sbjct: 252 TSCIFCKSFCRSSGGRSRARARERR 276


>04_04_0895 - 29168107-29168229,29168617-29170068
          Length = 524

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 285 IALNTDGCHRRHPRRYVSEFNISSC 211
           +A   DGC RR+P  Y S+  I +C
Sbjct: 254 LARMQDGCIRRYPALYGSDDRIQAC 278


>05_06_0202 -
           26339467-26339494,26339579-26339624,26339742-26339785,
           26340729-26340851,26341010-26341124,26341447-26342207,
           26342305-26342711,26342798-26342900,26344642-26345144
          Length = 709

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 306 LFTQNITIALNTDGCHRRH-PRRYVSEFN 223
           L +Q IT ALN +   R+H PRRY SE N
Sbjct: 679 LKSQEITEALNDELSQRQHKPRRY-SEMN 706


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,731,924
Number of Sequences: 37544
Number of extensions: 71608
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)