Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a02
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768...    29   3.0  
03_02_0715 + 10621789-10623243,10624074-10625018                       29   3.9  
04_04_0656 - 26988766-26988830,26989311-26989371,26989514-269895...    29   5.2  
01_04_0085 - 15866060-15866440,15866477-15866533,15866765-158669...    28   6.9  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    28   9.1  

>02_04_0480 -
           23274945-23275196,23275558-23275623,23276709-23276851,
           23276947-23277063,23277219-23278683,23279561-23280730
          Length = 1070

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 283 RRAQKLCNDIVQADDRPNTTPPRVKLSKITFQSTNKVNGK 402
           +R +KL N   +A  R  TTP   K+ KI  Q T+  NG+
Sbjct: 203 QRGKKLLNGDKKAKSRKVTTPFFEKMRKIKMQRTSNQNGE 242


>03_02_0715 + 10621789-10623243,10624074-10625018
          Length = 799

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +1

Query: 316 QADDRPNTTPPRVKLSKITFQSTNKVNGKIYRSVTLEKRKVTGKPAPHAENVKRKPEKK 492
           + DD    T  RVK       + N+  GK+  S  +  RKV    A +A +++R+ +K+
Sbjct: 208 EEDDELEATKVRVKNMGRRKSTLNQRRGKMKSSSKVASRKVGSVKARNAASIRRRQKKR 266


>04_04_0656 -
           26988766-26988830,26989311-26989371,26989514-26989588,
           26989694-26989849,26989975-26990061,26990140-26990340,
           26990942-26991043,26991223-26991374,26991488-26991557,
           26991646-26991765,26992708-26992761
          Length = 380

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 349 RVKLSKITFQSTNKVNGKIYRSVTLEKRKVTGKPAPHAENVKRKPEKKFNQ--KIFADIA 522
           +V+  +   Q   ++   + + +  E++K+   P P AEN   +P   +++   +FA  +
Sbjct: 241 KVEAERAYHQRVLEILDHLEQEMVSERQKIEAPPTPSAENYMAQPPPSYDEVNGMFASSS 300

Query: 523 VNTLVT 540
           V+  VT
Sbjct: 301 VDDSVT 306


>01_04_0085 -
           15866060-15866440,15866477-15866533,15866765-15866923,
           15866991-15867186,15867358-15867662
          Length = 365

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 415 VTLEKRKVTGKPAPHAENVK 474
           +T + RK+TG+P P  ENVK
Sbjct: 147 LTHKSRKITGQPEPSLENVK 166


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 313 VQADDRPNTTPPRVKLSKITFQSTNKVNGKIYRSVTLEKRKVTGKPAP 456
           V   D+P +TP   KLS++  +     NGK   ++  E+  +T  P P
Sbjct: 244 VNGADQPPSTP---KLSEVVLKRNEDENGKTEETLVAEQCNLTKDPNP 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,241,382
Number of Sequences: 37544
Number of extensions: 263576
Number of successful extensions: 539
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)