Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b07
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969...    31   0.85 
01_03_0271 + 14454681-14456949,14457222-14457476,14458800-144588...    30   2.0  
11_06_0510 + 24420402-24422582                                         29   3.4  
01_03_0018 - 11686420-11687460                                         29   4.5  
11_06_0514 - 24477720-24479915                                         28   6.0  
04_03_0096 + 11158108-11159083,11159116-11159744                       28   7.9  

>01_06_1202 +
           35396165-35396260,35396398-35396549,35396694-35396938,
           35397044-35398350
          Length = 599

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
 Frame = +2

Query: 146 SSLSTNTTMFLLYFLIVVALVSADVHDKELKIEENP-RVYCGRH-LANARMVLCYDTVEK 319
           +S S++  +FLL   ++  L  A+VH  E  ++E P +  C  H +      L   T+E 
Sbjct: 2   ASSSSSRLLFLLSCSVLALLAGAEVHHHEFIVQETPVKRLCKTHNVITVNGQLPGPTLEV 61

Query: 320 RAQSYLDANIISAGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLVDECCLKPCYTY 487
           R    +  N+++    +    ++  +   R F        GP  V +C +KP  +Y
Sbjct: 62  REGDTVVINVVNHAQYN----VTIHWHGIRQFRTGWAD--GPEFVTQCPIKPGGSY 111


>01_03_0271 + 14454681-14456949,14457222-14457476,14458800-14458864,
            14459053-14459171,14459270-14459324
          Length = 920

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
 Frame = +2

Query: 215  DVHDKE--LKIEENPRVYCGRHLANARMVLCYDTV---EKRAQSYLDANIISAGDLSSWP 379
            +VHD +  LK+  N RV+CG H+        +DT    +    S L+   ++A    S  
Sbjct: 814  EVHDPQIPLKLAPNQRVFCGLHMEIVLEAYMFDTETLDDDEVVSNLNCRPMAARSAISIV 873

Query: 380  GLSSQYAKTRAFALAEKSKRG 442
             L+  Y   R   +    K G
Sbjct: 874  ALTLNYKMARKNRMQNHGKGG 894


>11_06_0510 + 24420402-24422582
          Length = 726

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 396 YWEDRPGQELKSPAEIMFAS 337
           YW+ RP   L SPA IMF +
Sbjct: 130 YWKSRPSMRLMSPAIIMFVA 149


>01_03_0018 - 11686420-11687460
          Length = 346

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +2

Query: 308 TVEKRAQSYLDANIISAGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLV 454
           T+E   +   +A     G +  WP   S    TR   + E   RG GLV
Sbjct: 291 TIELMEEPMRNAEFFRRGVVGGWPNYLSPEMATRIDEITESKFRGSGLV 339


>11_06_0514 - 24477720-24479915
          Length = 731

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 396 YWEDRPGQELKSPAEIMFAS 337
           YW+ RPG  L  PA IMF +
Sbjct: 130 YWKSRPGVRLMIPAIIMFVA 149


>04_03_0096 + 11158108-11159083,11159116-11159744
          Length = 534

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 239 IEENPRVYCGRHLANARMVLCYDTVEKRAQSYLDANIISAGDLS 370
           ++  P V+ GRH    R +     ++    SY D N++ + DLS
Sbjct: 168 VDSEPPVFPGRHYELPRSLYSCVALQTLCLSYCDLNLLESIDLS 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,978,000
Number of Sequences: 37544
Number of extensions: 317665
Number of successful extensions: 725
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)