Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b05
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879...    32   0.39 
07_01_0168 + 1179292-1180354,1180880-1180923                           29   3.6  
03_02_0924 + 12429764-12430120,12430562-12430637,12430803-124308...    29   3.6  

>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
            23288510-23289353,23289468-23290120,23290573-23290676,
            23290898-23291000
          Length = 1724

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -3

Query: 504  IKYFSNQVKY----FSDFSYYFAHNYLKLHIMNLQLASKDLLDTEQ*H*FFLSECQNQQP 337
            ++  SNQ +Y    F D S Y   N   +H  +LQLAS  +  T + H    +E QN+  
Sbjct: 1198 VEQLSNQAEYLSEIFKDLSGYMDENITLVH-HSLQLASSKVAHTLEEHDTLRNELQNKDT 1256

Query: 336  HS 331
            H+
Sbjct: 1257 HN 1258


>07_01_0168 + 1179292-1180354,1180880-1180923
          Length = 368

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 198 NVWSAYEKHGRNVFKEDGLHLILVDCLNGKIAITQVANLLLCLYANEAV 344
           N W    +HGR +F+   + L + D + G +   +     LC +A  AV
Sbjct: 96  NCWPLDCRHGRALFQSSNVELTIWDPMTGDVRRQREPYGTLCTFATAAV 144


>03_02_0924 +
           12429764-12430120,12430562-12430637,12430803-12430849,
           12431850-12431962,12432056-12432129,12432258-12432353,
           12432440-12432559,12432660-12432893,12433486-12433634,
           12434145-12434301,12434387-12434542,12435359-12435735,
           12435871-12436020,12437071-12437253,12437440-12437643,
           12437869-12437975,12438253-12438406,12438796-12438917,
           12439541-12439787
          Length = 1040

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 42  FKMLKPKALTEVLSQANTGGVENTLLLNHQGALLAYSGYNDKDARVTAAIASNVWSAYEK 221
           F  L    L EVL QA    +E ++ +      L   GYNDK + + ++I +   S   K
Sbjct: 638 FVNLLKDELNEVLYQAYVAKLETSMSVVGSNLELKLYGYNDKLSTLLSSILAASQSFSPK 697

Query: 222 HGR-NVFKED 248
             R  V KED
Sbjct: 698 SDRFEVIKED 707


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,842,020
Number of Sequences: 37544
Number of extensions: 248370
Number of successful extensions: 535
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)