Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a08
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0205 + 1764034-1767601,1767934-1767944                           29   4.1  
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427...    28   5.4  
10_02_0088 - 5121626-5122120,5122149-5122169                           28   7.1  
05_05_0267 - 23704249-23704401,23704476-23704780,23704967-237056...    28   7.1  
08_02_0746 + 20721421-20721649,20722912-20722971,20723318-207233...    27   9.4  
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178...    27   9.4  
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449...    27   9.4  

>01_01_0205 + 1764034-1767601,1767934-1767944
          Length = 1192

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 192 SKHLDFSHSLWASVIPGYQLAHCR-WYTSM 278
           ++ LD+SH+ ++S++P + L   + WY SM
Sbjct: 798 AEFLDYSHNAFSSILPNFTLYLSKTWYLSM 827


>04_04_0923 +
           29441740-29441980,29442321-29442401,29442630-29442719,
           29443123-29443203,29443721-29443774,29444062-29444111,
           29444542-29444623,29444734-29444838,29445514-29445641,
           29445726-29445797,29445887-29445937,29446029-29446100,
           29446201-29446278,29446446-29447270,29447648-29448556
          Length = 972

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 150 EECFDRVEHSLRGCSKHLDFSHSLWASVIPGYQLAHCRWYTSMWSI 287
           E  +D  E  +       +F + LW  ++  Y++ H  +   MWSI
Sbjct: 673 EGLYDEYEDIMNNSVTEEEFEY-LWNEMVDSYEVQHINFLKHMWSI 717


>10_02_0088 - 5121626-5122120,5122149-5122169
          Length = 171

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 496 LVLAASHPYQLYSIPVEP 443
           L LA SH YQ+ S+P+ P
Sbjct: 131 LALALSHKYQIVSVPIRP 148


>05_05_0267 -
           23704249-23704401,23704476-23704780,23704967-23705674,
           23707772-23708114,23708300-23708374,23708625-23708675,
           23708747-23708818,23708903-23709042,23709227-23709280,
           23709446-23709553,23709769-23709864,23709946-23710005,
           23710352-23710411,23711699-23711927
          Length = 817

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +3

Query: 138 FHLFEECFDRVEHSLRGCSKHLDFSHSLWASVIPGYQLAHCRWYTSMWSI 287
           F   E  +D  E  +       +F + LW  +I  +++ H  +   MWSI
Sbjct: 428 FRSKEGLYDEYEDIINNSVTEEEFEY-LWQEMIDSFEVQHINFLKHMWSI 476


>08_02_0746 +
           20721421-20721649,20722912-20722971,20723318-20723377,
           20723458-20723553,20723764-20723871,20724037-20724090,
           20724275-20724414,20724499-20724570,20724642-20724692,
           20724943-20725017,20725205-20725585,20726372-20727604,
           20727679-20727831
          Length = 903

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 150 EECFDRVEHSLRGCSKHLDFSHSLWASVIPGYQLAHCRWYTSMWSI 287
           E  +D  E  +       +F + LW  +I  +++ H  +   MWSI
Sbjct: 456 EGLYDEYEDIINNSVTEEEFEY-LWQEMIDSFEVQHINFLKHMWSI 500


>03_05_0226 -
           22115285-22115404,22115477-22116661,22117037-22117861,
           22118029-22118106,22118370-22118420,22118510-22118581,
           22118666-22118667,22119453-22119557,22119668-22119749,
           22120178-22120227,22120514-22120567,22121084-22121164,
           22121567-22121656,22121884-22121964,22122304-22122544
          Length = 1038

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 150 EECFDRVEHSLRGCSKHLDFSHSLWASVIPGYQLAHCRWYTSMWSI 287
           E  +D  E  +       +F + LW  ++  Y++ H  +   MWSI
Sbjct: 607 EGLYDEYEDIMNNSVTEEEFEY-LWNEMVDSYEVQHIYFLKHMWSI 651


>03_01_0611 +
           4493618-4493641,4494705-4494730,4495758-4497471,
           4498179-4499263,4499351-4500296
          Length = 1264

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 294 LNLHIGACRSSQASPSYAVLLHGNTIPFVFGTV 392
           +  +I  C   Q   SY   +H  T+ F+FGTV
Sbjct: 868 MTANIPVCMLDQCRKSYLRSIHWKTLIFLFGTV 900


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,203,053
Number of Sequences: 37544
Number of extensions: 347097
Number of successful extensions: 865
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)