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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a02
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1026 + 30214437-30214937                                        239   1e-63
02_05_0416 + 28791512-28792012                                        236   1e-62
11_04_0079 - 13284869-13284929,13285518-13285639,13285749-132858...    31   1.0  
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414           29   2.3  
03_06_0776 - 36176390-36177589                                         29   4.1  
06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338     28   5.4  
12_02_0178 - 14941342-14941391,14941909-14942002,14942498-149427...    28   7.1  
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545...    28   7.1  
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470...    28   7.1  
07_03_0574 - 19629875-19631032                                         27   9.4  
07_03_0313 + 16620817-16621515                                         27   9.4  
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488...    27   9.4  

>04_04_1026 + 30214437-30214937
          Length = 166

 Score =  239 bits (586), Expect = 1e-63
 Identities = 114/163 (69%), Positives = 140/163 (85%), Gaps = 1/163 (0%)
 Frame = +1

Query: 121 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 297
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 298 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 477
           V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA+IMRNR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR 120

Query: 478 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 606
           SMA+ ++G+VKEILGT  SVGCTV+G+ P DL  +I+ G + I
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163


>02_05_0416 + 28791512-28792012
          Length = 166

 Score =  236 bits (577), Expect = 1e-62
 Identities = 112/163 (68%), Positives = 139/163 (85%), Gaps = 1/163 (0%)
 Frame = +1

Query: 121 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 297
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 298 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 477
           V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA++MR R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRPR 120

Query: 478 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 606
           SMA+ ++G+VKEILGT  SVGCTV+G+ P DL  +I+ G + I
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163


>11_04_0079 -
           13284869-13284929,13285518-13285639,13285749-13285820,
           13286048-13286200,13289510-13289709,13289745-13289947,
           13289991-13290181
          Length = 333

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 599 KAPLLMSSIRSCGGLPSTVHPTDCAVPRISF 507
           +APL   S+RSCG L   + P + ++PR+ +
Sbjct: 120 QAPLSPKSVRSCGPLKLVIEPYNGSLPRLHY 150


>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
          Length = 522

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 277 WKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 405
           W    + V   V +    + V+P+A A +IRA+ + P  R++Q
Sbjct: 33  WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75


>03_06_0776 - 36176390-36177589
          Length = 399

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 403 QKNIKHNGNISLEDVIGIAKIMRNRSMARY 492
           +K+I++ G++ LE    + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142


>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
          Length = 740

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/74 (28%), Positives = 39/74 (52%)
 Frame = -1

Query: 612 FINGQSSAVDVINKIMWRPALHSTSN*LCCAKNLFY*ARKVPGH*SVSHDLRNADYIFKG 433
           F++  +  + ++N I++RPA+ S +  +C A  +F  A         +  L+ + YIF G
Sbjct: 412 FMSSIALIILLVNPILYRPAIRSYALSVCTAVGMF--ALMCAYAAGSTQHLKTSIYIF-G 468

Query: 432 DVAVVFDIFLLFTV 391
            VA+V  I +L  +
Sbjct: 469 LVALVLFIMILVLI 482


>12_02_0178 -
           14941342-14941391,14941909-14942002,14942498-14942716,
           14943409-14943492,14943783-14944067,14944349-14944501,
           14944618-14944740,14945429-14945495,14946122-14946309,
           14947134-14947250,14947720-14947812,14948377-14948459,
           14948565-14948610
          Length = 533

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 408 KYQTQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRDSW 521
           K+    + LP RCN+ C     + + P PF  S+   W
Sbjct: 145 KWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIRSREFLW 182


>11_01_0669 -
           5454116-5454153,5454569-5454770,5454865-5455029,
           5455278-5456183
          Length = 436

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 118 KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 246
           K+P + F  N +KIV ++C G EV         +G  G+  +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412


>06_03_1069 -
           27345207-27345488,27345746-27346078,27346252-27347041,
           27347153-27347351,27347522-27347667,27347823-27348094,
           27348161-27348262,27348351-27348470,27348576-27348729,
           27348986-27349114,27349554-27349900
          Length = 957

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 138 VKLRGHFVDYLVQLYTIITLNPNGWVWIPQ 49
           V LR H    L  L  +   +P  W+WI Q
Sbjct: 81  VSLRSHLASVLQSLSQVRPRSPASWIWISQ 110


>07_03_0574 - 19629875-19631032
          Length = 385

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 455 MPITSSREMLPLCLIFFCFLRSRG-GSLRALMIRAAAEGTTAIW 327
           +P     E++P C ++F F R+ G  SL A  + AA      +W
Sbjct: 247 LPFAGKAELVPGCNLWFGFSRADGSSSLCAADLAAAPHRACGVW 290


>07_03_0313 + 16620817-16621515
          Length = 232

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 284 PFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILI 147
           PF     +A++      D     +LGAK D+   S P H K  +L+
Sbjct: 15  PFGQRCRIALAEKKLPYDYSEQELLGAKSDLLLRSNPIHAKVPVLL 60


>04_04_1551 -
           34348110-34348225,34348468-34348606,34348658-34348896,
           34349042-34349140,34349207-34350188,34350737-34350832,
           34350936-34351064,34351253-34351332,34351420-34351661,
           34351743-34352692
          Length = 1023

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 160 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 261
           N +C G E G  S  AP++ PLG+ PK  G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,827,159
Number of Sequences: 37544
Number of extensions: 407654
Number of successful extensions: 1136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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