Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0033
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534...    30   1.9  
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532...    30   1.9  
11_06_0179 + 20952070-20955228                                         29   3.4  
08_02_0222 + 14446967-14448310                                         29   3.4  
10_07_0104 - 12907816-12908301                                         29   4.5  
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583...    28   5.9  
01_06_0523 - 30009191-30010531                                         28   5.9  
10_08_0041 - 14374684-14377339,14377371-14378233                       28   7.8  

>11_01_0658 +
           5342508-5343602,5343697-5343764,5343994-5344042,
           5344217-5344333,5344438-5344506,5344631-5344725,
           5345580-5345658,5346499-5346563,5347368-5347461,
           5347675-5347744,5348363-5349357
          Length = 931

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 11  VIFIIFLVLLVWMICARSTKRKEPKKTLTPAIDQNGSQVNFYYGA 145
           ++F   L +  W  CAR  +   P++++ P + Q G+ V  Y  A
Sbjct: 436 IVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQLGAVVQKYQSA 480


>11_01_0657 +
           5322295-5323367,5323436-5323555,5323743-5323791,
           5323968-5324084,5324200-5324268,5324394-5324488,
           5325183-5325521,5327043-5327084,5327814-5327907,
           5328121-5328190,5328719-5329677
          Length = 1008

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 11  VIFIIFLVLLVWMICARSTKRKEPKKTLTPAIDQNGSQVNFYYGA 145
           ++F   L +  W  CAR  +   P++++ P + Q G+ V  Y  A
Sbjct: 446 IVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQLGAVVQKYQSA 490


>11_06_0179 + 20952070-20955228
          Length = 1052

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = +1

Query: 436 FWSIYELFLLYPTYRNSLFNVKV*GMKCRRFHFSTDLQNDDVI*SQTVPS*FYQRPELSS 615
           FW++     +   Y N+  N  V  M CRR  F+ +LQ   V       S  +      +
Sbjct: 162 FWTMCPHCQMRYQYYNNAINTTVCCMNCRRNFFAYNLQEQPVPTPNVPYSSQFPANMFPN 221

Query: 616 ETKWPVSDRSHKIEI 660
           + + P+S + H +++
Sbjct: 222 QRRDPISRQGHPVKL 236


>08_02_0222 + 14446967-14448310
          Length = 447

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 137 YGAHTPYAESIAPSHHSTYAHYYDDEEDGWEMP 235
           Y  H    + + P  HS   H Y++EE G+ +P
Sbjct: 303 YCHHDDQQDCVLPEQHSQELHGYNNEEQGYLLP 335


>10_07_0104 - 12907816-12908301
          Length = 161

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +2

Query: 254 YMKERLHNGVNGKMNSLA---RSNASIYGTKEDLYDRWKRHADPGKKEKTDSDGEGHRGA 424
           YM E  + G NG M  +A   RS  S++G    + D  +  ADP  +    + G     +
Sbjct: 41  YMHEFFNGGPNGSMARVAPPARSGGSLFGFVSVVDDALREGADPASRLVGRAQGLAAGTS 100

Query: 425 SLENSGQSMNYFCYT 469
             + S  +M  F +T
Sbjct: 101 LADGSVTTMLDFVFT 115


>02_01_0783 +
           5835517-5835861,5835989-5836060,5836140-5836220,
           5836293-5836490,5836576-5836647,5836803-5836889,
           5836986-5837084,5837191-5837274,5837351-5837437,
           5837578-5837649,5837912-5838025,5838127-5838214,
           5838293-5838388,5838507-5838694
          Length = 560

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 287 GKMNSLARSNASIYGTKEDLYDRWKRHADPGKKEKTDSD 403
           G M+ LAR + + + T+ DL+  W++  D  ++   DSD
Sbjct: 380 GWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSD 418


>01_06_0523 - 30009191-30010531
          Length = 446

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 371 PRVSSTYRKDPPSFHRCWRLTSPSC 297
           PR SSTYR+ P S  +C  L  P C
Sbjct: 130 PRRSSTYRRVPCSSPQCRALRFPGC 154


>10_08_0041 - 14374684-14377339,14377371-14378233
          Length = 1172

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 221 GWEMPNFYNETYMKERLHNGVNGKMNSLARSNASIYGTKEDLYDRWKRH 367
           GWE  N    T +   LH G  G+ N +  +  +I     D   RW+R+
Sbjct: 568 GWEQ-NLVLCTDVDGLLHTGAGGEQNMVCDNVGTIVSGLHDTIARWERN 615


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,626,849
Number of Sequences: 37544
Number of extensions: 355171
Number of successful extensions: 1003
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)