Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0023
         (300 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665...    26   4.7  
04_03_0099 + 11185832-11185893,11186744-11186912,11186940-111870...    26   4.7  
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342...    26   6.3  
12_02_1034 - 25562214-25562280,25562661-25562794,25562990-255631...    25   8.3  
08_02_1518 + 27644404-27645135                                         25   8.3  

>04_03_0256 -
           13564070-13564456,13564543-13565299,13565734-13566535,
           13566884-13566917
          Length = 659

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 268 ENTSSVNLSHEFY*RTRGSMCATFFCKYSKKGFSVELDTCSLLKATAA 125
           EN ++ N   + Y   + +  + FFC Y+K+    +    S+L A  A
Sbjct: 284 ENNTTSNCYLQLYCLPQSATYSLFFCPYTKQKLQTKTILVSILAAIGA 331


>04_03_0099 +
           11185832-11185893,11186744-11186912,11186940-11187075,
           11188152-11188205,11188280-11188578
          Length = 239

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 261 HRPSTSAMNSISAREEVCVQRSSANIRRKVFQL 163
           + P   A NS+  REE+ V  S A + R +F L
Sbjct: 185 YSPKDQANNSLECREELRVHHSLAILARSLFFL 217


>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
            26834330-26834732,26834840-26835118,26835285-26835716,
            26836362-26836838,26837171-26837212,26837285-26837545,
            26837637-26838938,26839146-26839575,26839643-26840046,
            26840360-26840716,26840842-26841102,26841494-26842141,
            26842231-26842452,26842547-26842768,26842860-26843009,
            26843739-26844111,26844467-26844689,26845167-26845425,
            26845585-26845920,26846013-26846999,26848395-26849624,
            26849706-26849768,26849858-26849910,26849998-26850079,
            26850520-26850588,26851070-26851129,26851205-26851267,
            26851993-26852101,26852742-26852827,26853120-26853847,
            26854613-26854676
          Length = 3716

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 187  YSKKGFSVELDTCSLLKATAATYPLSTATATRD 89
            ++ K        CSLLK   + +PL  AT  +D
Sbjct: 2102 FNNKMLDAGKSLCSLLKMVFSAFPLEAATTPQD 2134


>12_02_1034 -
           25562214-25562280,25562661-25562794,25562990-25563109,
           25563331-25563510,25563847-25564020,25564466-25564639,
           25564734-25564827,25566088-25566242
          Length = 365

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 253 VNLSHEFY*RTRGSMCATFFCKYSKKGFSVELDTCSLLKATAATYP 116
           VN+   F      S C TF  +YS++ FS     C +   +A +YP
Sbjct: 255 VNIDKAFDSPHTHSSCFTFLRQYSEESFSKA--ACMVAPKSAISYP 298


>08_02_1518 + 27644404-27645135
          Length = 243

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 196 FCKYSKKGFSVELDTCSLLKATA 128
           F K SKK  SV+L++C ++K  A
Sbjct: 139 FRKISKKSSSVDLESCRVVKLLA 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,855,404
Number of Sequences: 37544
Number of extensions: 102559
Number of successful extensions: 282
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)