Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0018
         (358 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683...    59   9e-10
12_01_0440 - 3478361-3479152,3479163-3479681                           27   4.3  
10_08_0500 - 18357828-18358649                                         27   4.3  
06_03_1212 + 28462459-28463283                                         27   4.3  
05_04_0279 + 19724662-19724700,19725344-19726369                       27   4.3  
07_03_0772 + 21386396-21386617                                         27   5.7  

>07_03_0405 -
           17767303-17767665,17767815-17768039,17768115-17768342,
           17768607-17768621,17768622-17768810,17769106-17769213,
           17769917-17770045
          Length = 418

 Score = 59.3 bits (137), Expect = 9e-10
 Identities = 30/61 (49%), Positives = 39/61 (63%)
 Frame = -2

Query: 315 PDGVRCPGLSRTRDGLLIASVALTLNRQIKDTRCYYMPHRLDMYVNSLSKVLEMDYKPQV 136
           PD    P LSR RDGL+I+ + L L RQIKD   + M  R D Y + LS+ L+ D+KPQV
Sbjct: 349 PDASCTPSLSRYRDGLMISDMDLNLCRQIKDKWGFRMTARYDTYASLLSEYLKPDFKPQV 408

Query: 135 V 133
           +
Sbjct: 409 I 409


>12_01_0440 - 3478361-3479152,3479163-3479681
          Length = 436

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 107 RSRSNNDHRNLCILRRIFMY 48
           RSR ++DH N  + RR+F Y
Sbjct: 319 RSRRDDDHHNRLVARRLFNY 338


>10_08_0500 - 18357828-18358649
          Length = 273

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 229 DLSVQGQGYGRDQQAVSGAGQTGAPNAVRA 318
           DL VQGQGY        G G   A NA  A
Sbjct: 56  DLGVQGQGYAAAANGGIGGGGVEAVNAAAA 85


>06_03_1212 + 28462459-28463283
          Length = 274

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 256 RSLDPEQTDQRHTLLLHAPPPGHVREQSQQS 164
           ++L+P++ D  H  +L   PP      SQ S
Sbjct: 136 QALEPDEADDHHAKILQPSPPKKTANSSQPS 166


>05_04_0279 + 19724662-19724700,19725344-19726369
          Length = 354

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 321 FGPDGVRCPGLSRTRDGLLIASVALTLNRQI 229
           FGP+G R  GL   +  ++++ + LT +RQ+
Sbjct: 273 FGPNGRRLGGLPFAKSLIIVSGLDLTCDRQL 303


>07_03_0772 + 21386396-21386617
          Length = 73

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 250 LDPEQTDQRHTLLLHAPPPGHVREQSQQST 161
           L+P++TD  H  +L   PP      S++ +
Sbjct: 8   LEPDETDDHHAKILQPSPPKRTANMSRRES 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,954,761
Number of Sequences: 37544
Number of extensions: 173860
Number of successful extensions: 545
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)