Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0017
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0594 + 25349612-25352530                                         28   5.4  
11_06_0567 - 25038537-25038957,25039059-25039252                       28   7.1  
01_06_0495 - 29779499-29781325                                         28   7.1  
11_06_0297 + 22056644-22058212,22058316-22058423,22058513-220586...    27   9.4  
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536...    27   9.4  

>11_06_0594 + 25349612-25352530
          Length = 972

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 246 AICFCLSVHFAQWVSKASGILSLIF 320
           ++CFC  +H + W+S A  +L+  +
Sbjct: 426 SLCFCSPLHLSSWLSNAEKMLTFCY 450


>11_06_0567 - 25038537-25038957,25039059-25039252
          Length = 204

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 231 CASCFAICFCLSVHFAQWVSKASGILSLI 317
           C +  A  FC  VH A +VS A+G+  L+
Sbjct: 135 CTTAAAGNFCNQVHIAMYVSLAAGVALLV 163


>01_06_0495 - 29779499-29781325
          Length = 608

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 316 IKDKIP-EALETHCAKCTDKQKQMAKQLAQGIKKTHPELWDEFITFYDPQGKYQTSFKDF 140
           +KD IP   L T  +K  D  K  A++L  G+ +     W+  I  Y   G+YQ + + F
Sbjct: 148 VKDPIPMNCLITGYSKSGDVVK--ARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLF 205


>11_06_0297 +
           22056644-22058212,22058316-22058423,22058513-22058678,
           22059000-22059056,22059382-22059479,22059556-22059765,
           22060469-22060582,22060819-22060948,22061165-22061298,
           22062279-22062359,22062798-22062872,22063210-22063221
          Length = 917

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 549 CVKCTGKQKSGADKVIRHLVNKRPD 623
           C  C GK+    D +++H+ NK P+
Sbjct: 401 CPYCVGKKIPDTDSLLQHMRNKHPE 425


>09_06_0176 +
           21351884-21352693,21352821-21352976,21353425-21353613,
           21354741-21356354,21356446-21356553,21356649-21357509,
           21357586-21357632,21358591-21358697,21359512-21359630,
           21359706-21359915,21360412-21360693,21360820-21360952,
           21361256-21361413,21362564-21362647,21362949-21363035
          Length = 1654

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 549 CVKCTGKQKSGADKVIRHLVNKRPD 623
           C  C GK+    D +++H+ NK P+
Sbjct: 809 CPYCVGKKIPNTDALLQHMRNKHPE 833


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,455,803
Number of Sequences: 37544
Number of extensions: 263049
Number of successful extensions: 682
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)