Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0012
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0563 - 19542116-19542217,19542631-19542712,19543823-195445...    28   5.1  
06_03_0083 + 16374830-16374922,16375917-16375974,16377893-163780...    28   6.8  

>07_03_0563 -
           19542116-19542217,19542631-19542712,19543823-19544595,
           19545207-19545296,19545612-19545689,19546112-19546207,
           19546285-19546365,19546587-19546787,19546875-19546967,
           19547052-19547116,19547684-19547715,19548844-19548956
          Length = 601

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 230 SHFYYYNLRFSLPSNHVSHFNYIDFIFFESD*ASVTSKSIL 352
           S F    + F+ P    SHFNYI ++ FE+  A V  ++ L
Sbjct: 524 SGFSNSGISFTTPRLAGSHFNYIFYVDFEASTAEVRVQNAL 564


>06_03_0083 +
           16374830-16374922,16375917-16375974,16377893-16378089,
           16378176-16378292,16378437-16378497,16378603-16378691,
           16378808-16378882,16378992-16379080,16379203-16379252,
           16379539-16379699,16380004-16380132,16380548-16380928
          Length = 499

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 88  VRFKKEKKTVVFINCHFFAFCVNNYRFRYFIQTYFVKR 201
           ++ KK KK     N   + F ++  RFR+  QT FVKR
Sbjct: 154 LKMKKWKKWESQTNSLEYQFAIDPSRFRFTHQTSFVKR 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,134,866
Number of Sequences: 37544
Number of extensions: 186103
Number of successful extensions: 335
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)