Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0007
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106...    44   1e-04
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    31   1.1  
11_01_0389 - 2937242-2939476,2939556-2939666,2941254-2941450,294...    29   2.5  
09_04_0452 - 17710180-17710968                                         28   5.8  

>02_05_1040 -
           33709588-33709880,33709960-33710200,33710498-33710672,
           33710781-33710892,33711906-33712145,33712253-33712436
          Length = 414

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +2

Query: 455 AVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIK 577
           AV R++    +FF ++A+IM G+K  KDPR  I +G W  K
Sbjct: 79  AVLRVSLGNFVFFTILAIIMAGIKDQKDPRDKIHHGGWMAK 119


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +1

Query: 331 APGLHNELQKLPFCT--NATDSTVTGLLPGNFKVDCDESGWIFGCL*NYICNMSLLSANG 504
           A GL +  +KLPFCT     + TV GL      + C + G +  C   ++        + 
Sbjct: 561 AGGLLSMAEKLPFCTQDQYANGTVEGLSEQELCIKCGKDGQLLKCSGCFLAVHDTCFGSS 620

Query: 505 VNYD 516
           V +D
Sbjct: 621 VTFD 624


>11_01_0389 -
           2937242-2939476,2939556-2939666,2941254-2941450,
           2941543-2941633
          Length = 877

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 331 APGLHNELQKLPFCTNATDST--VTGLLPGNFKVDCDESGWIFGC 459
           A GL +   K+PFCT   D+   V GL   +  + C + G +  C
Sbjct: 550 ATGLLSMADKIPFCTQDQDANGPVEGLSEQDLCIKCGKDGQLLKC 594


>09_04_0452 - 17710180-17710968
          Length = 262

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +2

Query: 464 RITFAT--CLFFLLMALIMIGVKSSKDPRAGIQNG-FWAIKYLLV 589
           R+T AT   +  L +  +++G+  SKD  AG+ NG +W   +L++
Sbjct: 150 RLTAATLNAVALLTIGAVVLGLHVSKDRPAGVTNGKYWMGFFLII 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,746,016
Number of Sequences: 37544
Number of extensions: 365664
Number of successful extensions: 846
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)