Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0038
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1010 - 7996921-7997673,7999212-7999399,7999688-7999784,800...    32   0.48 
04_04_0794 + 28104725-28104829,28105721-28105762,28106470-281065...    30   2.0  
03_01_0251 - 1956985-1957058,1957238-1957361,1957646-1957744,195...    29   3.4  
12_02_0902 + 24176326-24176706,24176785-24177017,24177121-241772...    28   6.0  
11_03_0185 - 11329594-11329890,11330873-11331598                       28   6.0  

>01_01_1010 -
           7996921-7997673,7999212-7999399,7999688-7999784,
           8000420-8000767,8001130-8001231,8001432-8001501,
           8001747-8001802,8001891-8002010
          Length = 577

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 30/92 (32%), Positives = 43/92 (46%)
 Frame = -1

Query: 596 SSVHHCLPPLPRQHWSFEPDNFIHHTKTDQLPTAREQSDQHRKRCISVRRPLVSFPSSLL 417
           S V H LP +     S +PDN IH T+ D   T++    QH      V  PLVS      
Sbjct: 87  SHVSHDLPKVS----SVKPDNTIHDTEEDH-DTSQTGPSQH------VVLPLVSSSLMQA 135

Query: 416 TCANSVLSADSSLNCVYRSPFCRGYLPCRTYY 321
             ++S++ A S+  C+      R Y PC+T +
Sbjct: 136 LVSSSLMQAFSAKPCIVL--IARSY-PCKTRF 164


>04_04_0794 +
           28104725-28104829,28105721-28105762,28106470-28106544,
           28106811-28106950,28107036-28107093,28107239-28107241,
           28107740-28107849,28108562-28108648,28108773-28108856,
           28109212-28109277,28109377-28109488,28109949-28110149
          Length = 360

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 201 CFLKLDFWEIFLESLISR---CSFWWVIEKHGVLTVFVL 308
           C L+ D   ++L + I++   C FWW I +  VLTV+ +
Sbjct: 154 CVLQFDHHCVWLGTCIAKRNYCRFWWYIFEQTVLTVWTV 192


>03_01_0251 -
           1956985-1957058,1957238-1957361,1957646-1957744,
           1957821-1957919,1958097-1958195,1958306-1958404,
           1958744-1958820,1959232-1959952
          Length = 463

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = -1

Query: 578 LPPLPRQHWSFEPDNFIHHTKTDQLPTAREQSDQHRKRCISVRRPLVSFPSSLLTCANSV 399
           +PP    H       F  H +T    +A  +   H K  +  RRPLV+ PSS    A   
Sbjct: 1   MPPSLSLHHHLLLFPFPSHVQTLNPLSASPRLHPHSKSLLPRRRPLVTSPSSFAVAAVDE 60

Query: 398 LSADSSL-NCV 369
              D ++ +CV
Sbjct: 61  FDEDFAIGDCV 71


>12_02_0902 +
           24176326-24176706,24176785-24177017,24177121-24177273,
           24177392-24177425,24177536-24177685,24177772-24177906,
           24177994-24178065
          Length = 385

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 518 KTDQLPTAREQSDQHRKRCISVRRPLVSFPSSLL 417
           K   L   R++  QH+ +C+S   P V  P+S L
Sbjct: 347 KCSNLTAIRDKYKQHKFKCVSTLLPPVDIPASYL 380


>11_03_0185 - 11329594-11329890,11330873-11331598
          Length = 340

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 415 PVLIAFYLQIPVLIASTGRHFVVA 344
           PV+     Q+PV++A T RHFV A
Sbjct: 84  PVVDGHPCQVPVVLAGTSRHFVEA 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,163,375
Number of Sequences: 37544
Number of extensions: 344113
Number of successful extensions: 857
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)