Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0036
         (329 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0194 + 12885340-12885708,12886098-12886367,12886476-128865...    27   3.6  
04_01_0191 - 2243061-2243433,2243496-2243764                           27   4.7  
07_02_0009 - 11716174-11716435,11716837-11717459,11718385-117184...    26   6.2  

>06_02_0194 +
           12885340-12885708,12886098-12886367,12886476-12886592,
           12888044-12888094,12889599-12889719,12890146-12890311,
           12890598-12890691
          Length = 395

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 98  ELKRSHSSKYTIEASNTAGTSSVEVTLKVYDKPSKPE 208
           E++    S YTI   + + T    + L+V+DK + PE
Sbjct: 250 EMQFDPFSYYTIVLQHESSTKVANIALEVFDKNTSPE 286


>04_01_0191 - 2243061-2243433,2243496-2243764
          Length = 213

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 321 GSCFSMAYFVSSRPPSSKGGFHSIVTDSRLISRIIT 214
           G  F +AY+ SS PP    G++  ++  + ++R  T
Sbjct: 93  GMAFFLAYYPSSEPPRDSNGYNVGLSSEQGLARAQT 128


>07_02_0009 -
           11716174-11716435,11716837-11717459,11718385-11718469,
           11719346-11719374
          Length = 332

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = +2

Query: 119 SKYTIEASNTAGTSSVEVTLKVYDKPSKPEGPVIMREISRESVTIEWKPPLDDGGLELTK 298
           +K+  EA+N++ +SS E   +  D   + EGP++  + S         PP  +GG    K
Sbjct: 66  AKHEKEAANSSSSSSSEEIDE--DDFFQIEGPILSTQYSLS-------PPPAEGGNRDAK 116

Query: 299 YAIEKHEP 322
            A E H+P
Sbjct: 117 QADEPHDP 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,854,519
Number of Sequences: 37544
Number of extensions: 97105
Number of successful extensions: 233
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)