Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0029
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351...    28   2.4  
07_03_0826 - 21774445-21774852,21776047-21776083,21776750-217768...    27   4.1  
10_04_0016 + 7601796-7601999,7602495-7602543,7603140-7603165,760...    27   5.5  
03_01_0171 + 1399378-1400349                                           27   7.2  
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108...    26   9.6  

>10_08_0267 -
           16333239-16333820,16333904-16334842,16334920-16335172,
           16336837-16337063,16338189-16339388
          Length = 1066

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 319 QSEELVWMANKKMYFTIEFILAREP 393
           + EEL W++NK  + T+E  +A  P
Sbjct: 690 EEEELAWVSNKDAFATVETTMAPSP 714


>07_03_0826 -
           21774445-21774852,21776047-21776083,21776750-21776839,
           21777251-21777399
          Length = 227

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 51  GKSSASQNLPPDRKRDSLRSSGEKLSGLIVRSTLF 155
           G S A   LPP R+RD+ RS G   +  + R T F
Sbjct: 102 GDSEAELALPPMRRRDANRSHGLTRAARVDRPTGF 136


>10_04_0016 +
           7601796-7601999,7602495-7602543,7603140-7603165,
           7603334-7603339,7603496-7603570,7603880-7603933
          Length = 137

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 139 CAVLCLFRLFIYTSHVLYRYIV 204
           C++LCL  +  Y  H+LY Y V
Sbjct: 66  CSMLCLHAIAYYKIHILYIYSV 87


>03_01_0171 + 1399378-1400349
          Length = 323

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +3

Query: 18  SRGSNRSVANTGKSSASQNLP-PDRKRDSLRSSGEKLSGLIVRSTLFISPFYLHVSRALP 194
           S  ++ S +++ +S AS+N   P       R  G     +++R   F+ P Y  V RALP
Sbjct: 195 STPASLSSSSSARSGASKNASAPPLLAAGRRGGGSSPWKILLRYLRFLMPLYRKV-RALP 253

Query: 195 LYSKKKKRVL-SSPA 236
                + RV  +SPA
Sbjct: 254 PLRAPRTRVSPASPA 268


>05_01_0160 +
           1081416-1081647,1081840-1082012,1082169-1082246,
           1082372-1082529,1082558-1082709,1083232-1083290,
           1083633-1083912,1084235-1084470,1084601-1084744,
           1084845-1085012
          Length = 559

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +3

Query: 63  ASQNLPPDRKRDSLRSSGEKLSGLIVRSTLFISPFYLHVSRALPLYSKK 209
           A   +P  R       S EKL    +  TLF  PF  HV      YS+K
Sbjct: 253 APSRMPLSRSSSGWGDSPEKLHQECLVHTLFQRPFSCHVDGCPFSYSRK 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,624,641
Number of Sequences: 37544
Number of extensions: 163274
Number of successful extensions: 314
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)