Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0027
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0651 + 30644241-30644615,30644751-30644858                       32   0.37 
12_02_0661 + 21644328-21644517,21644697-21644875,21644899-216459...    28   6.0  
06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168           27   8.0  

>02_05_0651 + 30644241-30644615,30644751-30644858
          Length = 160

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +3

Query: 342 MVKEKPNSIRIYDDEGFRRRAACIC--VRSDAETEVLLVTSSRRPDNWIXXXXXXXXXXX 515
           +V  +   ++ Y   G R    CI   VRS  E EVL++T S++    +           
Sbjct: 4   LVARQGRELQRYTSAGGRIVVGCIPYRVRSGGEMEVLVIT-SQKGHGMMFPKGGWELDES 62

Query: 516 XXXTAMREVLEEAGVIG 566
               A RE LEEAGV G
Sbjct: 63  MDEAARREALEEAGVRG 79


>12_02_0661 +
           21644328-21644517,21644697-21644875,21644899-21645922,
           21647108-21647262
          Length = 515

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 3   RWRRSXHEGYLIFDFREERKRQAIQHGLEIC 95
           R+ RS   G+LI+  +EE+K + +Q GL  C
Sbjct: 84  RYARSVR-GFLIYAIKEEKKVKKLQEGLAKC 113


>06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168
          Length = 536

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 557 SGFLKYLPHRSDRRLLFRLYSPARH 483
           +G L + PH  DRR LFR  SP RH
Sbjct: 181 TGGLSWEPHH-DRRSLFRPRSPPRH 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,342,344
Number of Sequences: 37544
Number of extensions: 228534
Number of successful extensions: 469
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)