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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0085
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664...   180   6e-46
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548...   162   2e-40
08_02_0707 - 20212190-20214592                                         31   0.53 
11_04_0414 + 17386806-17387936                                         29   2.8  
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272...    29   2.8  
01_06_0288 - 28228673-28228744,28228866-28229071,28229316-282295...    29   2.8  
03_05_0220 + 22063411-22063468,22063535-22063545,22064478-220646...    29   3.7  
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549...    28   6.5  
06_03_0536 + 21906583-21908037                                         28   6.5  
04_04_0422 + 25098612-25099025,25099500-25099633,25099817-251000...    27   8.7  
02_01_0412 - 3005600-3007759                                           27   8.7  
01_05_0604 - 23583244-23584989                                         27   8.7  

>03_02_0235 +
           6644083-6644125,6645218-6645315,6645448-6645498,
           6645573-6645686,6645771-6645971,6646047-6646148,
           6647245-6647352,6647745-6647995,6648108-6648279,
           6648341-6648397,6648555-6648710,6648807-6648857,
           6649053-6649193,6649270-6649464,6649534-6649665,
           6649768-6649941,6650396-6650635,6650761-6650955
          Length = 826

 Score =  180 bits (439), Expect = 6e-46
 Identities = 90/152 (59%), Positives = 108/152 (71%)
 Frame = +1

Query: 58  QSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEEL 237
           Q  MK   D ++ + + F  ++K  +LQEAR F+   +  RKC  ++TK+LYLLNQGE  
Sbjct: 3   QPYMKKDDDDEDVEYSPFYGIEKGAVLQEARAFHDPQLDARKCSQVITKLLYLLNQGETF 62

Query: 238 TTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYR 417
           T  EAT++FFA TKLFQSKD  LRRLVYL IKELSP + +VIIVTSSL KDM  K D YR
Sbjct: 63  TKVEATEVFFAVTKLFQSKDAGLRRLVYLMIKELSPSSDEVIIVTSSLMKDMNSKTDMYR 122

Query: 418 PAAIRALCSITDSTMLQAIERYMKQAIVDKNP 513
             AIR LC I D T+L  IERY+KQAIVDKNP
Sbjct: 123 ANAIRVLCRIIDGTLLTQIERYLKQAIVDKNP 154


>07_01_0718 +
           5484553-5484601,5484836-5484933,5485028-5485078,
           5485744-5485857,5485887-5485937,5485938-5486138,
           5486240-5486341,5486879-5486986,5487053-5487286,
           5488250-5488500,5488592-5488763,5489165-5489320,
           5489405-5489455,5489499-5489591,5489814-5490014,
           5490105-5490236,5490308-5490481,5490755-5490994,
           5491213-5491407
          Length = 890

 Score =  162 bits (393), Expect = 2e-40
 Identities = 88/159 (55%), Positives = 106/159 (66%), Gaps = 17/159 (10%)
 Frame = +1

Query: 88  KEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFF 267
           +EE  + F  ++K  +LQEAR F+   +  R+C  ++TK+LYLLNQG+  T  EAT++FF
Sbjct: 15  EEEYYSPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFF 74

Query: 268 ATTKLFQSKDVVLRRLVYLCIKELSPMAQD-----------------VIIVTSSLTKDMT 396
           ATTKLFQSKD  LRR+VYL IKELSP A +                 VIIVTSSL KDM 
Sbjct: 75  ATTKLFQSKDAGLRRMVYLMIKELSPSADEFSAVYGSLKVSVLHLLQVIIVTSSLMKDMN 134

Query: 397 GKDDEYRPAAIRALCSITDSTMLQAIERYMKQAIVDKNP 513
            K D YR  AIR LC I DST+L  IERY+KQAIVDKNP
Sbjct: 135 SKTDMYRANAIRVLCRIIDSTLLTQIERYLKQAIVDKNP 173


>08_02_0707 - 20212190-20214592
          Length = 800

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = -1

Query: 546 QSGDQCGRSYCRILINNSLFHVPLNSLQHCTVCDATQSSNGGRSVLIVFTRHVLRK*RSH 367
           QSGD   +    I  + ++  +PLNS+   T C    S NGG   L     H   + R H
Sbjct: 599 QSGDHAHQDISNISSDPAILEIPLNSIH--THCSEAHSCNGG---LQSSENHNKSRNRHH 653

Query: 366 NDH 358
            DH
Sbjct: 654 IDH 656


>11_04_0414 + 17386806-17387936
          Length = 376

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 310 RLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRALCSI 447
           R+VY+C           +   S++ K +T   DE+ PAA  A  SI
Sbjct: 183 RIVYVCRDPKDAFVSMWLFTMSNMVKGVTTTTDEHHPAAAAAAPSI 228


>01_06_1795 -
           39925019-39926029,39926265-39926408,39927200-39927277,
           39927722-39927838,39927925-39927981,39928492-39928623,
           39928725-39928922,39929364-39929474,39929570-39929785,
           39929879-39930064,39930590-39931192
          Length = 950

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
 Frame = +1

Query: 58  QSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEEL 237
           +SI +AR    EED  + + LD        R      V  RK   +L +++Y      E+
Sbjct: 30  KSIGEARSKA-EEDRIISRELDHLK-----RRLADPDVPRRKMKELLLRLVYA-----EM 78

Query: 238 TTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQD-VIIVTSSLTKDMTGKDDEY 414
              +A+       K+   + + L+R  YL +        D VI+V +++ KD+   +   
Sbjct: 79  LGHDASFGHIHAVKMTHDESLPLKRTGYLAVSLFLDERHDLVILVVNTIQKDLRSDNYLV 138

Query: 415 RPAAIRALCSITDSTMLQAI 474
             AA+ A C +     + A+
Sbjct: 139 VCAALTAACRLIGEEAIPAV 158


>01_06_0288 -
           28228673-28228744,28228866-28229071,28229316-28229554,
           28229649-28229705,28229787-28229873,28229963-28230507,
           28231574-28231714
          Length = 448

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = -2

Query: 560 GADRCKAETSAADPTAGFLSTIACFMYLSIACS---IVLSVMLHKARMAAGRYSSSLPVM 390
           G+ R   E  A +P     +  A ++ LS+A +   IV   +L   R+    YSS   V+
Sbjct: 276 GSTRVANELGAGNPEG---ARSAVYVVLSVAVTEALIVCGTLLASRRLLGRAYSSEEEVI 332

Query: 389 SFVSEEVTM--ITSCAIGLNSLM 327
           SFV+  V +  IT    GL  +M
Sbjct: 333 SFVAMMVPLVCITVVTDGLQGVM 355


>03_05_0220 +
           22063411-22063468,22063535-22063545,22064478-22064609,
           22064696-22065799,22065874-22066566,22066968-22067019,
           22067861-22067916,22067917-22068063
          Length = 750

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 527 PHWSPLCICQHRTGFSASLDK 589
           P   PLC+C H    SA+ DK
Sbjct: 158 PQQQPLCVCDHLQNLSANTDK 178


>06_03_1359 +
           29554078-29554375,29554470-29554655,29554768-29554923,
           29555557-29555694,29555789-29555909,29556339-29556345
          Length = 301

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -1

Query: 489 FHVPLNSLQHCT--VCDATQSSNGGRSVLIVFTRHVLRK*RSHNDHI 355
           FHV     +HC   + + ++SS GG+S + +F+RH  R   S +  +
Sbjct: 122 FHV---CTEHCAAKMAEVSRSSEGGKSPMSLFSRHSRRSSSSEDGSV 165


>06_03_0536 + 21906583-21908037
          Length = 484

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 506 RILQ*DLPHWSPLCICQHRTGFSASL 583
           R+L  D   W P+C+ +HR+  S++L
Sbjct: 369 RLLSGDEREWRPVCMPEHRSNISSNL 394


>04_04_0422 +
           25098612-25099025,25099500-25099633,25099817-25100067,
           25100130-25100494
          Length = 387

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 275 VVAKNISVASCVVNSSPWFSK*SIFVKIWMHFLGCTGVELKYLASCKRV 129
           V+   +  A+ V   + W SK S+ V +W+  LG   + + Y+   +R+
Sbjct: 312 VILPTLVAAADVFRLTTWSSKPSVCVGMWIPHLGHARLRIVYIIISRRL 360


>02_01_0412 - 3005600-3007759
          Length = 719

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 79  GEPSLCSALLIFYCNL 32
           G P LCS +L+ +CNL
Sbjct: 660 GNPKLCSPMLVHHCNL 675


>01_05_0604 - 23583244-23584989
          Length = 581

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 275 VVAKNISVASCVVNSSPWFSK*SIFVKIWMHFLGCTGVELKYLASCKRV 129
           V+   +  A+ V   + W SK S+ V +W+  LG   + + Y+   +R+
Sbjct: 380 VILPELVAAADVFRLTTWSSKPSVCVGMWIPHLGHARLRIVYIIISRRL 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,216,785
Number of Sequences: 37544
Number of extensions: 328533
Number of successful extensions: 828
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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