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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0055
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528...   100   1e-21
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842...    95   3e-20
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866...    65   4e-11
08_02_0893 + 22327485-22327671,22327756-22328627                       28   5.6  
05_01_0192 + 1394342-1396645                                           28   5.6  
03_02_0389 - 8036575-8036841,8037011-8037133,8037516-8037736,803...    28   5.6  
02_04_0489 + 23404757-23404812,23406170-23406296,23406418-234064...    28   5.6  
02_04_0485 + 23338980-23339187,23339277-23339305,23339962-233400...    28   5.6  
02_04_0482 + 23291986-23292181,23292289-23292317,23293500-232936...    28   5.6  
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54...    28   5.6  
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018...    28   7.5  
09_04_0377 + 17086775-17088310                                         27   9.9  
04_04_1495 - 33984225-33985295,33986107-33986238                       27   9.9  
04_04_1174 - 31473859-31474269,31476011-31476420,31477102-31477261     27   9.9  
02_01_0658 + 4906979-4907296                                           27   9.9  

>02_05_0540 +
           29852109-29852195,29852304-29852477,29852585-29852841,
           29852954-29853125,29853513-29853551,29853647-29853715,
           29853795-29853911,29854190-29854401,29854578-29854736,
           29854810-29855009,29855100-29855266,29855346-29855442,
           29855560-29855651,29855861-29856139
          Length = 706

 Score =  100 bits (239), Expect = 1e-21
 Identities = 49/128 (38%), Positives = 83/128 (64%), Gaps = 5/128 (3%)
 Frame = +1

Query: 1   LMRAYTLSVLTRL-----ANTGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKV 165
           LMR   L +L RL      + G  I + +I++W N+K++++G+ S + SF+D+ L++G+ 
Sbjct: 501 LMRFNMLQLLNRLRSHSQGSQGKEITDADILKWANSKVKASGRTSQMESFKDKSLSNGRF 560

Query: 166 VIDLIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMI 345
            ++L+ A++P  +N+ +V  G ++EE   NA Y IS+AR+ G  V+ LPEDI E   KMI
Sbjct: 561 FLELLSAVQPRVVNWKVVTKGEDDEEKKLNATYTISVARKIGCSVFLLPEDIIEVNQKMI 620

Query: 346 MTVFACLM 369
           +T+ A +M
Sbjct: 621 LTLTASIM 628



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 25/88 (28%), Positives = 46/88 (52%)
 Frame = +1

Query: 64  EKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVIDLIDAIKPGSINYDLVLPGGNEEE 243
           EK +++W+N+ L+ AG + ++ +F  +V  DG+    L+ A+ P   + +  L   +  E
Sbjct: 277 EKMLLRWMNHHLKKAGYKKTVSNFSTDV-KDGEAYAYLLKALAPEH-SPETTLETKDPSE 334

Query: 244 NLANAKYAISMARRCGGRVYALPEDITE 327
               AK  +  A +   + Y  P+DITE
Sbjct: 335 R---AKLVLEQAEKLDCKRYLTPKDITE 359



 Score = 31.5 bits (68), Expect = 0.61
 Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
 Frame = +1

Query: 64  EKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVIDLIDAIKPGSINYDLVL--PGGNE 237
           E+    W+N    S G  S + +  ++V   G V+++++D + PGS+N+ L    P    
Sbjct: 403 ERSFRMWIN----SLGVDSYVNNVFEDV-RHGWVLLEVLDKVSPGSVNWKLASKPPIKLP 457

Query: 238 EENLANAKYAISMARRCGGRVYALP-EDITERKPKMIMTVFACLMALDYIPTMD 396
              L N    + + +     +  L   DI +   K+I+ +   LM  + +  ++
Sbjct: 458 FRKLENCNQVVKIGKELKFSLVNLAGNDIVQGNKKLIVALLWQLMRFNMLQLLN 511


>01_05_0108 +
           18183250-18183336,18183451-18183962,18184074-18184245,
           18184984-18185022,18185117-18185185,18185281-18185397,
           18185842-18186056,18187085-18187240,18187328-18187527,
           18187927-18188084,18188321-18188417,18188738-18188829,
           18189018-18189191
          Length = 695

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 48/125 (38%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
 Frame = +1

Query: 1   LMRAYTLSVLTRLA--NTGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVID 174
           LMR   L +L  L   + G  I + +I+ W N K++ +GK S + SF+D  L+ G   ++
Sbjct: 528 LMRYNILQLLKNLRFHSNGKEITDNDILIWANKKVKDSGKHSRMESFKDRSLSSGIFFLN 587

Query: 175 LIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMTV 354
           L+ A++P  +N+ LV  G  +EE   NA Y IS+AR+ G  ++ LPEDI E   KM++T+
Sbjct: 588 LLGAVEPRVVNWSLVTKGEKDEEKQMNASYIISVARKLGCSIFLLPEDILEVNQKMMLTL 647

Query: 355 FACLM 369
            A +M
Sbjct: 648 TASIM 652



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +1

Query: 64  EKEIVQWVNNKLQSAGKQSSIRS-FQDEVLADGKVVIDLIDAIKPGSINYDL 216
           E+    W+N    S G  + I + F+D  L +G V++++ID I PGS+N+ +
Sbjct: 430 ERSFRLWIN----SLGISTYINNVFED--LRNGWVLLEVIDKIAPGSVNWKM 475


>02_04_0414 -
           22685981-22686178,22686374-22686465,22686580-22686676,
           22686801-22686916,22687314-22687513,22687588-22687740,
           22687960-22688171,22688403-22688519,22688613-22688687,
           22688815-22688853,22689518-22689689,22689809-22690056,
           22690151-22690324,22690418-22690504
          Length = 659

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
 Frame = +1

Query: 1   LMRAYTLSVLTRLA--NTGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVID 174
           LMR   L +L  L   +    I + +I+ W NNK              D+ +A+G   ++
Sbjct: 498 LMRTSILQLLKNLRTHSKDKEITDADILIWANNK--------------DKSIANGVFFLE 543

Query: 175 LIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMTV 354
           L+ A+    ++  +V  G ++EE  +NA Y IS+AR+ G  ++ LPEDI E  PKMI+ +
Sbjct: 544 LLHAVNHRHVDLSMVKKGEDDEEKKSNATYTISVARKLGCTLFMLPEDIMEVNPKMILVL 603

Query: 355 FACLM 369
            A +M
Sbjct: 604 TASIM 608


>08_02_0893 + 22327485-22327671,22327756-22328627
          Length = 352

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 381 VVQRHKAGEHRHDHLGLPFGDVLGQRVHAPA 289
           + + H+A  HRH HL LP   +L  R++  A
Sbjct: 244 ICRAHQASRHRHRHLLLPCVAILHNRLNLEA 274


>05_01_0192 + 1394342-1396645
          Length = 767

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
 Frame = -3

Query: 401 GASMVGM*SSAIRQANTVMIILG---FRSVMSSGSAYTRPPQRRAIDIAYLAFAKFSSSL 231
           G + VG   SA  Q +T M  +    F +  SS S+ ++P  R A   +    A  SS+ 
Sbjct: 220 GDAFVGF--SASTQGSTEMHAVEWWTFSTPTSSSSSPSKPSPRMATPSSPPPEAPVSSAA 277

Query: 230 PP-GSTRS*LMEPGLMASIKSITTFPSASTSS 138
           PP  S    L  P  +  + + T  P AST S
Sbjct: 278 PPPASLNPMLPSPPQLPGVSTTTPSPPASTVS 309


>03_02_0389 -
           8036575-8036841,8037011-8037133,8037516-8037736,
           8037788-8037812,8038344-8038445,8038556-8038951,
           8039647-8039699,8039813-8039897,8040220-8040370,
           8040457-8040464
          Length = 476

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -2

Query: 162 LPIGQYFVLEAPNGGLL---ARALQLIVDPLNDFLLYD 58
           L  G Y VLE PN GL+   +     IV PL D L +D
Sbjct: 12  LVAGGYLVLERPNAGLVLSTSARFYAIVRPLRDELSHD 49


>02_04_0489 +
           23404757-23404812,23406170-23406296,23406418-23406487,
           23406997-23407102,23407185-23407296,23407792-23407914,
           23408017-23408176,23408300-23408376,23408474-23408526,
           23408700-23408754,23409049-23409683,23410412-23410733,
           23410838-23411146,23411468-23411470
          Length = 735

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 70  EIVQWVNNKLQSAGKQSSIRSFQDEV----LADGKVVIDLIDAIKPGSINYDLVLPGG 231
           ++V +++++L   G +  +R   +EV    LA G+    ++   KPG+  Y LV P G
Sbjct: 302 DVVSYIHDRLSVEGAE--LRVICEEVVEFGLASGENTTVILVQFKPGAFQYQLVDPAG 357


>02_04_0485 + 23338980-23339187,23339277-23339305,23339962-23340064,
            23340311-23340482,23340880-23340940,23341257-23341389,
            23341938-23342208,23342595-23342734,23342912-23342998,
            23343078-23343586,23343671-23344488,23344522-23344720,
            23345552-23345696,23345728-23345782,23347652-23347778,
            23347867-23347936,23348448-23348553,23348636-23348747,
            23349243-23349365,23349468-23349627,23349751-23349827,
            23349925-23349977,23350151-23350205,23350500-23351174
          Length = 1495

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 70   EIVQWVNNKLQSAGKQSSIRSFQDEV----LADGKVVIDLIDAIKPGSINYDLVLPGG 231
            ++V +++++L   G +  +R   +EV    LA G+    ++   KPG+  Y LV P G
Sbjct: 1260 DVVSYIHDRLSVEGAE--LRVICEEVVEFGLASGENTTVILVQFKPGAFQYQLVDPAG 1315


>02_04_0482 + 23291986-23292181,23292289-23292317,23293500-23293602,
            23293855-23293979,23294788-23294920,23295468-23295739,
            23295806-23295873,23296126-23296265,23296443-23296529,
            23296610-23297118,23297203-23298020,23298054-23298252,
            23299084-23299228,23299260-23299314,23301184-23301310,
            23301399-23301468,23301980-23302085,23302168-23302279,
            23302775-23302897,23303000-23303159,23303283-23303359,
            23303457-23303509,23303683-23303737,23304032-23304706
          Length = 1478

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 70   EIVQWVNNKLQSAGKQSSIRSFQDEV----LADGKVVIDLIDAIKPGSINYDLVLPGG 231
            ++V +++++L   G +  +R   +EV    LA G+    ++   KPG+  Y LV P G
Sbjct: 1243 DVVSYIHDRLSVEGAE--LRVICEEVVEFGLASGENTTVILVQFKPGAFQYQLVDPAG 1298


>01_01_0071 +
           548255-548399,548478-548651,548787-548892,548992-549130,
           549216-549293,549395-549460,550061-550201,550417-550527,
           550614-550655,550739-550825,551033-551118,551681-551684
          Length = 392

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 219 HQVVVDGARFDGIDQVNNDLPIG 151
           H V++DG   DG+  V ND P+G
Sbjct: 149 HDVLIDGMLKDGLWDVYNDFPMG 171


>02_02_0418 +
           10000744-10000840,10000952-10001023,10001786-10001848,
           10001952-10002008,10002159-10002226,10002327-10002408,
           10002517-10002572,10002934-10003236,10003638-10003724,
           10004454-10004628,10004813-10004934,10005171-10005334,
           10006201-10006455,10006979-10007100,10007220-10007341,
           10007452-10007600,10007649-10007652
          Length = 665

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 13  YTLSVLTRLANTGNPIIEKEI-VQWVNNKLQSAGKQSSIRSFQDEVLADG 159
           + ++V T +  TGN  +  ++ V+ V+N L  AGK+ S+ + Q   L  G
Sbjct: 66  FDINVFTEVHKTGNVSLMPDVSVELVSN-LMEAGKKPSVAAIQGLALGGG 114


>09_04_0377 + 17086775-17088310
          Length = 511

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 42  QHWQPYHREGNRSVGQQ*AAERGQAILH*ELPGRSTGRW 158
           + W PYHR+  R V ++ A +R          G   G W
Sbjct: 67  RQWSPYHRDRGRDVEREWARDRDHPAPRRGGGGAGAGAW 105


>04_04_1495 - 33984225-33985295,33986107-33986238
          Length = 400

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 121 SIRSFQDEVLADGKVVIDLIDAIKPGS 201
           S++ F+D V ADG   ID ++ ++ GS
Sbjct: 301 SLQEFRDVVRADGAFAIDRLELVRGGS 327


>04_04_1174 - 31473859-31474269,31476011-31476420,31477102-31477261
          Length = 326

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 408 LDGRVHGGYVVQRHKAGEHRHDH 340
           +DG   GGY  Q   AG H H H
Sbjct: 238 VDGYTGGGYYEQDSSAGYHHHHH 260


>02_01_0658 + 4906979-4907296
          Length = 105

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 139 DEVLADGKVVIDLIDAIKPGSINYDLVLPGGNEEE 243
           D +L DG  V    D + PG    D+VLPGG + +
Sbjct: 74  DVILPDGGSV----DVVLPGGGGVDVVLPGGGDSD 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,506,830
Number of Sequences: 37544
Number of extensions: 381841
Number of successful extensions: 1188
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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