Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120005.Seq
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591...    30   1.8  

>07_01_0770 +
           5912412-5912476,5913759-5913779,5914015-5914638,
           5915264-5915439,5915526-5916124
          Length = 494

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -3

Query: 627 TSKNRNSSRDTREQNVFGFVVSRMLLVVA 541
           +S  R  SRD R +N+FGF VS +L+ +A
Sbjct: 18  SSTTRFMSRDIRAKNIFGFSVSLILINLA 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,688,532
Number of Sequences: 37544
Number of extensions: 321676
Number of successful extensions: 671
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)