Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060077.seq
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0544 + 4306436-4306762                                           30   2.0  
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678     29   3.5  
11_02_0036 + 7599646-7599950,7600106-7600145,7600403-7600437,760...    29   4.6  
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885...    28   6.1  
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471           28   6.1  
07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206     28   8.1  
06_02_0190 + 12832559-12832916,12833012-12833092,12833262-12833305     28   8.1  

>11_01_0544 + 4306436-4306762
          Length = 108

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 626 LSRISQLSFNSAKFALVSTAVCLFLLAGIAALSLEDDDVVGRPFFYPSF 480
           L+  S+ S   A  A V   +CLFL+A  AA +  +  V   P + PS+
Sbjct: 5   LATRSRKSLAIAVAAAVPLLMCLFLVAAAAAAASSETAVASSPQYQPSY 53


>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
          Length = 261

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 326 KKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFV 460
           +   I+ N Y+   +W T+  QP    S   W L K +   A +V
Sbjct: 133 RSSTISENSYLCVATWDTRAPQPSQIESAVRWALRKRSQNKAVYV 177


>11_02_0036 +
           7599646-7599950,7600106-7600145,7600403-7600437,
           7600789-7601189,7601281-7601361,7601451-7601536
          Length = 315

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 529 RLKTTMSSVGHFFTHLFSVIKNEHKICQFGRVFHQIP 419
           +++  +SS     TH F  +K E+ IC F R    IP
Sbjct: 185 KMERLVSSFCDAQTHSFDAMKKEYYICGFARSIESIP 221


>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
            29288625-29288903,29289047-29289122,29289725-29289787,
            29292116-29292164,29292413-29292504,29293017-29293068,
            29293209-29293271,29293382-29293431,29293941-29294016,
            29294444-29294656,29294763-29294869,29294966-29295074,
            29295489-29295689,29295773-29296033,29296154-29296171,
            29296287-29296397,29296755-29297030,29297108-29297382,
            29297814-29298165,29298371-29298655,29298715-29299261,
            29301658-29301781,29301871-29301946,29302062-29302136,
            29302300-29302353,29302833-29302892,29302977-29303093,
            29303228-29303361,29303480-29303682,29303879-29303976,
            29304358-29304461,29304537-29304702,29304803-29304925,
            29305047-29305129,29305217-29305358,29305523-29305549,
            29305784-29305854,29305930-29306518
          Length = 2046

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 206  LQQIQHGPANCYCKFLEKKNINYILNVMPVMQDERKMSK 322
            L Q +HG +   C F +  N+ Y +    V+ +E + SK
Sbjct: 983  LDQYEHGCSIISCSFSDDNNVYYCVGTAYVLPEENEPSK 1021


>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
          Length = 331

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 374 YTKIKQPEWPSSPAMWDLVKNTPELADFVFI-FDHTEK 484
           + +  +PEWPSS A+     N PEL   V +  D T K
Sbjct: 169 HDQTNKPEWPSSVAVQHDQTNKPELPSSVAVQHDQTNK 206


>07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206
          Length = 961

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 14  RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 142
           +  FIT     C+    + +KN   +FQR T+I  G   G  +
Sbjct: 803 KTAFITRIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 845


>06_02_0190 + 12832559-12832916,12833012-12833092,12833262-12833305
          Length = 160

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 529 RLKTTMSSVGHFFTHLFSVIKNEHKICQFGRVFHQIP 419
           +++T +SS      + F   KNEH +C F +    IP
Sbjct: 44  KMETLVSSFCDPQAYRFDAAKNEHYVCGFAKSVESIP 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,715,469
Number of Sequences: 37544
Number of extensions: 396472
Number of successful extensions: 1134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)