Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021029X
         (361 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826...    35   0.022
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    29   0.83 
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572...    27   3.4  
08_01_0601 - 5268520-5271112,5272448-5272950                           27   5.9  

>01_06_1758 -
           39681942-39682030,39682115-39682345,39682643-39682679,
           39683604-39683835,39683937-39684022,39684126-39684218,
           39684302-39684465,39684541-39684702,39684783-39684962,
           39685079-39685515,39685614-39685669
          Length = 588

 Score = 34.7 bits (76), Expect = 0.022
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 238 PRLGFCSLQPFNKNFYDPHPTVLKRSPYGGAEYRXNHEVTV 360
           P+  F SL PF KNFY   P V   S    ++YR   ++TV
Sbjct: 106 PKPDFRSLIPFEKNFYVECPAVQAMSDMDVSQYRRQRDITV 146


>08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,
            2875909-2875947,2876309-2876354,2877380-2877922,
            2878827-2880847,2880972-2881215,2881642-2881684,
            2881923-2881962,2883580-2883675,2883712-2883759,
            2883964-2884290
          Length = 1498

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 230  MRRPDWDSVHSNLSTKTFMIHILQFSKDHH 319
            MR PD D   S    K F IH+   S DHH
Sbjct: 1226 MRSPDDDKPTSWSDQKVFEIHVYPSSNDHH 1255


>03_02_0758 +
           10954268-10954841,10955988-10957145,10957176-10957216,
           10957412-10957448,10957534-10957954,10958201-10958234
          Length = 754

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 262 QPFNKNFYDPHPTVLKRSPYGGAEYRXNHEVTV 360
           +PFNK+FY+  P+V   S    A+Y  +  + V
Sbjct: 177 EPFNKDFYEEKPSVSGMSEQEVADYMKSLAIRV 209


>08_01_0601 - 5268520-5271112,5272448-5272950
          Length = 1031

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 95  PWKRWSKFGGGNKFG 139
           PW RW++ GGG   G
Sbjct: 763 PWGRWARSGGGGAIG 777


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,787,981
Number of Sequences: 37544
Number of extensions: 144836
Number of successful extensions: 297
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)