Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021010
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0446 - 17680408-17680721,17680812-17681108,17682740-17683490     30   1.8  
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570...    29   2.4  
09_06_0251 - 21859484-21862162                                         29   3.2  
02_04_0583 + 24078766-24079800,24080585-24081643                       29   3.2  
09_06_0376 - 22694914-22696071,22696111-22696416                       29   4.2  
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511...    29   4.2  
03_05_0851 + 28225608-28226570                                         27   9.8  

>09_04_0446 - 17680408-17680721,17680812-17681108,17682740-17683490
          Length = 453

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 237 WILYPLKCPRSDSGATGVQLSTALVPDVTWDRLRL 133
           W+++  +CP     A     +  + P +TWDR+RL
Sbjct: 353 WVVFYTECPLKAVTANLSITNNIVAPRITWDRIRL 387


>03_02_0719 +
           10654842-10654977,10655039-10655124,10655226-10657001,
           10657782-10657926,10658017-10658735
          Length = 953

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 100 VRRGPTYSGSGQPQPVPGDIRHQRRAQLDSRGAGVAAGALQRIQ 231
           ++R P YSGS Q   VP  +    R  LD R   + +  ++R Q
Sbjct: 146 LKRSPEYSGSDQFSYVPRRVDGYMRKPLDLRAQKMPSSPIERFQ 189


>09_06_0251 - 21859484-21862162
          Length = 892

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -1

Query: 214 PPQRLRRHGSPAEHGAGAGCHLGQAEVARSLSMSVLSGPADHFN 83
           PP  LR H  P  HG       G A V  S ++   +GP D  N
Sbjct: 321 PPDTLRPHYLPQNHGGPRDTTYGFARVNLSETVDSCNGPLDADN 364


>02_04_0583 + 24078766-24079800,24080585-24081643
          Length = 697

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = -2

Query: 624 GLEASELGAVELGIDLLLAVFGVSTAV 544
           G+E  E GAVEL  DL  AV+ VS AV
Sbjct: 122 GVEPEEGGAVELSDDLWAAVWEVSAAV 148


>09_06_0376 - 22694914-22696071,22696111-22696416
          Length = 487

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +1

Query: 109 GPTYSGSGQPQPVPGDI 159
           GPT SG  Q QP PGDI
Sbjct: 42  GPTPSGDAQDQPGPGDI 58


>09_06_0374 +
           22649455-22650024,22650085-22650637,22650812-22651147,
           22651171-22652605,22652939-22653062
          Length = 1005

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +1

Query: 109 GPTYSGSGQPQPVPGDI 159
           GPT SG  Q QP PGDI
Sbjct: 507 GPTPSGDAQDQPGPGDI 523


>03_05_0851 + 28225608-28226570
          Length = 320

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 199 RRHGSPAEHGAGAGCHLGQA 140
           ++H +PA+ G GAG H G A
Sbjct: 129 QQHSNPADRGGGAGDHKGAA 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.137    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,795,675
Number of Sequences: 37544
Number of extensions: 322135
Number of successful extensions: 1260
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)