Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0026
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1205 - 24865991-24866077,24866255-24866259,24867746-24868343 40 0.001
01_06_1252 - 35748000-35748173,35748243-35748375,35749771-357498... 40 0.001
08_01_0498 - 4327502-4328395 39 0.002
03_04_0055 + 16891212-16891848,16893166-16893206 38 0.005
05_05_0135 - 22626163-22626198,22626391-22626441,22626516-226266... 37 0.009
05_07_0196 + 28352320-28352522,28352679-28352808,28353774-283538... 33 0.082
02_05_0591 - 30183105-30183869 32 0.19
01_07_0092 - 41021743-41022276 32 0.25
06_01_1181 + 10148653-10149405 31 0.44
03_06_0145 - 31973924-31975837 29 2.3
04_04_0576 + 26346611-26346637,26346758-26346883,26347161-263472... 27 7.2
03_05_0793 + 27755704-27756386,27756473-27757274,27757379-277576... 27 9.5
02_04_0491 + 23417790-23417859,23418550-23418773,23418951-234189... 27 9.5
>07_03_1205 - 24865991-24866077,24866255-24866259,24867746-24868343
Length = 229
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/35 (54%), Positives = 27/35 (77%), Gaps = 4/35 (11%)
Frame = +1
Query: 361 ENNSDSGSKSNA----PLREQDRFLPIANIAKIMK 453
+++++SG SNA REQDRFLPIAN+++IMK
Sbjct: 3 DSDNESGGPSNAGEYASAREQDRFLPIANVSRIMK 37
>01_06_1252 -
35748000-35748173,35748243-35748375,35749771-35749847,
35750465-35750509,35750584-35750679,35751125-35751130,
35751259-35751388,35751510-35751706
Length = 285
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/35 (54%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = +1
Query: 352 LEDENNSDSGSKSNAP-LREQDRFLPIANIAKIMK 453
+ D + +SGS + +REQDRFLPIANI++IMK
Sbjct: 1 MADAGHDESGSPPRSGGVREQDRFLPIANISRIMK 35
>08_01_0498 - 4327502-4328395
Length = 297
Score = 38.7 bits (86), Expect = 0.002
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 379 GSKSNAPLREQDRFLPIANIAKIMK 453
G ++P +EQDRFLPIAN+++IMK
Sbjct: 49 GGGGDSPAKEQDRFLPIANVSRIMK 73
>03_04_0055 + 16891212-16891848,16893166-16893206
Length = 225
Score = 37.5 bits (83), Expect = 0.005
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 6/37 (16%)
Frame = +1
Query: 361 ENNSDSGSKSN------APLREQDRFLPIANIAKIMK 453
++++DSG SN + REQDRFLPIAN+++IMK
Sbjct: 3 DSDNDSGGPSNYAGGELSSPREQDRFLPIANVSRIMK 39
>05_05_0135 -
22626163-22626198,22626391-22626441,22626516-22626608,
22627249-22627254,22628051-22628180,22628333-22628583
Length = 188
Score = 36.7 bits (81), Expect = 0.009
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +1
Query: 379 GSKSNAPLREQDRFLPIANIAKIMK 453
G +REQDRFLPIANI++IMK
Sbjct: 29 GGGGGGGVREQDRFLPIANISRIMK 53
>05_07_0196 +
28352320-28352522,28352679-28352808,28353774-28353851,
28355562-28355664,28356109-28356302,28356501-28356518
Length = 241
Score = 33.5 bits (73), Expect = 0.082
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 358 DENNSDSGSKSNAPLREQDRFLPIANIAKIMK 453
D + G +EQDRFLPIANI +IM+
Sbjct: 6 DGTENGGGGGGGGVGKEQDRFLPIANIGRIMR 37
>02_05_0591 - 30183105-30183869
Length = 254
Score = 32.3 bits (70), Expect = 0.19
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +1
Query: 361 ENNSDSGSKSNAP-LREQDRFLPIANIAKIMK 453
+ N + + AP +REQDR +PIAN+ +IM+
Sbjct: 16 DGNGGAQQAAAAPAIREQDRLMPIANVIRIMR 47
>01_07_0092 - 41021743-41022276
Length = 177
Score = 31.9 bits (69), Expect = 0.25
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 400 LREQDRFLPIANIAKIMK 453
++EQDR LPIAN+ +IMK
Sbjct: 32 IKEQDRLLPIANVGRIMK 49
>06_01_1181 + 10148653-10149405
Length = 250
Score = 31.1 bits (67), Expect = 0.44
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +1
Query: 394 APLREQDRFLPIANIAKIMK 453
A +REQDR +PIAN+ +IM+
Sbjct: 27 AVVREQDRLMPIANVIRIMR 46
>03_06_0145 - 31973924-31975837
Length = 637
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 283 DLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKS 390
D+ +D+G DD VV DV E + D GS S
Sbjct: 262 DMAHVDDGGAATDDNSVVEVTDVAEHTADVDDGSAS 297
>04_04_0576 +
26346611-26346637,26346758-26346883,26347161-26347295,
26348162-26348332
Length = 152
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +1
Query: 244 LKFLIMDSDELGNDLVRLDNGFLVADDTFVVN----SDDVLEDENNSDSGSKSNAPLR 405
LK + + G+D V+ F+ D +N S ++LE+E N + KSN +R
Sbjct: 86 LKLFVDLIEHKGSDCVK---PFIALQDCIKINPEAFSKEILEEEENDEEAEKSNLKVR 140
>03_05_0793 +
27755704-27756386,27756473-27757274,27757379-27757634,
27758355-27758566,27760494-27760709
Length = 722
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 3 FLQNKINQVPFTQCVN-KYINVNVVSGEHINSFLDYLNAMIQRR 131
FLQNK+ Q PF + + K I V+ + G ++ +QRR
Sbjct: 240 FLQNKVKQPPFVRTKSLKNIVVDKIYGLYLQVLAKMPREFLQRR 283
>02_04_0491 +
23417790-23417859,23418550-23418773,23418951-23418964,
23419842-23419968,23420092-23420161,23420661-23420766,
23420849-23420966,23421457-23421576,23421679-23421859,
23421954-23422030,23422117-23422169,23422336-23422387,
23422683-23423885
Length = 804
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 307 FLVADDTFVVNSDDVLEDEN 366
F+ +DDTF +NSD+V D N
Sbjct: 552 FINSDDTFGINSDEVELDPN 571
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,839,762
Number of Sequences: 37544
Number of extensions: 177971
Number of successful extensions: 365
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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