Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0023
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 58 5e-09
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 53 2e-07
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 53 2e-07
01_05_0146 + 18591235-18591345,18591662-18591830,18592282-185923... 42 4e-04
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 41 0.001
01_01_1102 - 8734984-8736090,8736430-8736557,8736671-8736708,873... 35 0.054
10_08_0518 + 18486315-18486462,18486495-18486712,18486763-184868... 31 0.67
10_08_0702 + 19978917-19979243,19979350-19979724 31 1.2
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 30 1.5
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 29 3.5
03_02_0522 + 9103357-9103437,9103538-9103592,9103687-9103739,910... 29 3.5
06_03_0290 - 19193707-19193752,19193822-19194090 29 4.7
12_01_0567 + 4641223-4641326,4641700-4642440,4642534-4642735,464... 28 6.2
08_02_1266 - 25721277-25721354,25721429-25722236,25724215-25724567 28 6.2
04_03_0744 + 19237901-19237912,19238119-19238611,19238860-192389... 28 6.2
03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835 28 6.2
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043... 28 6.2
03_05_0935 - 28948368-28948769,28949028-28949120,28949240-289493... 28 8.2
01_06_1830 + 40194257-40194472,40195797-40196159,40196420-40196950 28 8.2
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 58.4 bits (135), Expect = 5e-09
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Frame = +2
Query: 98 VFLSHLGTGTSMKTILHFAQEIDAAGRFQQFDYGPT-NNMIIYNSETPPEYDLRKIT--L 268
VFL+H T+ K ++H AQ I G ++DYG +N Y TPP YD+ I
Sbjct: 338 VFLAHEPQATATKNMIHLAQMI-RGGTIAKYDYGNAGDNREHYGQATPPAYDVTAIPGDF 396
Query: 269 PIYLLYSRNDLLSSEQDVDKLYQDL---ETRTEIYLVPD--PEFNHVDYLMANDA 418
P++L Y D LS QDV +L + L +R L ++ H D++MA +A
Sbjct: 397 PLFLSYGGRDSLSDVQDVSRLLRALGQSHSRDGDKLTVQYLADYAHADFVMARNA 451
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Frame = +2
Query: 155 QEIDAAGRFQQFDYGPTNNMIIYNSETPPEYDLRKI--TLPIYLLYSRNDLLSSEQDVDK 328
Q + G F ++DYG N+ Y PP +DL I +LPI++ Y D L+ DV +
Sbjct: 347 QSVIRKGTFAKYDYGLLGNLRRYGHLRPPAFDLSSIPESLPIWMGYGGLDALADVTDVQR 406
Query: 329 LYQDLETRTEIYLVPDPEFNHVDYLMANDAPRLLNDKVLQFL 454
++L + E+ + D + H+D++M+ A + +++FL
Sbjct: 407 TIRELGSTPELLYIGD--YGHIDFVMSVKAKDDVYVDLIRFL 446
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 53.2 bits (122), Expect = 2e-07
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Frame = +2
Query: 173 GRFQQFDYGPT-NNMIIYNSETPPEYDLRKIT--LPIYLLYSRNDLLSSEQDVDKLYQDL 343
G +FDYG +NM YN PP Y+L I +PI+L + D L D L + L
Sbjct: 271 GGVSRFDYGNAKDNMKHYNQPRPPPYNLSSIPNHVPIFLTHGGEDYLGDVPDTRHLLRTL 330
Query: 344 ETR---TEIYLVPDPEFNHVDYLMANDAPRLLNDKVLQF 451
+ I ++ P++ H D++MA +AP L+ ++ F
Sbjct: 331 VKKHNSDSIEVIYVPDYAHADFIMAYNAPELIYGPMVDF 369
>01_05_0146 +
18591235-18591345,18591662-18591830,18592282-18592334,
18592369-18592487,18592618-18593698
Length = 510
Score = 42.3 bits (95), Expect = 4e-04
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Frame = +2
Query: 50 FICGTDEKQFNKTL-LPVFLSHLGTGTSMKTILHFAQEIDAAGRFQQFDYG-PTNNMIIY 223
++ G D + L LP + G S LH AQ I A RFQ +DYG P NM Y
Sbjct: 320 YVVGGDSSNWVGVLGLPHYNMDDMPGVSFHVALHLAQ-IKRAKRFQMYDYGSPVANMEAY 378
Query: 224 NSETPPEYDLR--KITLPIYLLYSRNDLLSSEQDVDKLYQDLETRTEIYLVPDPEFNHVD 397
+ P + I +P+ L+ + D + S V K Y+ + + E+ H+D
Sbjct: 379 GTPEPLDLGAHYGLIDIPVDLVAGQRDRVISPSMVKKHYKLMRKAGVEVSYNEFEYAHLD 438
Query: 398 YLMAN 412
+ ++
Sbjct: 439 FTFSH 443
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Frame = +2
Query: 173 GRFQQFDYG-PTNNMIIYNSETPPEYDLRKIT--LPIYLLYSRNDLLSSEQDVDKLYQDL 343
G ++DY P N+ Y PP YD+ I PI+L Y D LS DV L DL
Sbjct: 314 GVLTKYDYVMPDANVARYGQADPPAYDMAAIPAWFPIFLSYGGRDSLSDPADVALLLDDL 373
Query: 344 ----ETRTEIYLVPDPEFNHVDYLMANDAPRLLNDKVLQF 451
+ + P+ H D+++ A L+ + V+ F
Sbjct: 374 RRGGHAGDRLTVQYLPQLAHADFVIGVCAKDLVYNDVISF 413
>01_01_1102 -
8734984-8736090,8736430-8736557,8736671-8736708,
8736815-8737030,8737252-8737413,8738381-8738559,
8738693-8738799,8738918-8739082,8739201-8739284,
8739364-8739559
Length = 793
Score = 35.1 bits (77), Expect = 0.054
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Frame = +2
Query: 80 NKTLLPVFLSHLGTGTSMKTILHFA-QEIDAAGRFQQFDYGPTNNMIIYNSETPPEYDLR 256
N L V LG + ++H + E D + I SE PPE R
Sbjct: 371 NSKLTQVLRDSLGCESKTLMLVHISPDEGDLCETICTLGFATRVRSIRLESEEPPEMKAR 430
Query: 257 KITLPIYLLYSRNDLLSSEQDVDKLYQDLETRTEIYLVPDP 379
K TL I L NDL +D+ + ++LE E P P
Sbjct: 431 KETLLIDLGQKVNDLEHECEDIRRKIKNLEESMEHLTGPQP 471
>10_08_0518 +
18486315-18486462,18486495-18486712,18486763-18486808,
18487436-18487709,18487797-18488052
Length = 313
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = +2
Query: 242 EYDLRKITLPIYLLYSRNDLLSSEQDVDKL-YQDLET 349
+YD+R++ IY+L+SRN++ +++D + + DL T
Sbjct: 161 KYDIRRVVRTIYILFSRNEIPIAKEDQEIMDLADLST 197
>10_08_0702 + 19978917-19979243,19979350-19979724
Length = 233
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +2
Query: 275 YLLYSRNDLLSSEQDVDKLYQDLETRTEIYLVPDPEFNHVDYLMANDAPRLLNDKVLQFL 454
Y+L + L D + + +DL+ ++E+ L +P V L+ N P + +LQ+L
Sbjct: 18 YVLRVKLALSLKGLDYEYVEEDLKNKSELLLSSNPVNKKVPVLIHNGKPVCESQIILQYL 77
Query: 455 LAAFAD 472
AF D
Sbjct: 78 DEAFPD 83
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +2
Query: 389 HVDYLMANDAPRLLNDKVLQFLLAAFADHQGPDRHMGTRESVRQYKASRKVLNT*GGG 562
+ D+ + + R + D +L +L + + D H+G++ + +KA+R V GGG
Sbjct: 42 YADHTASGRSLRYIEDYLLNEVLPFYGNTHTEDSHVGSKSTRLVHKAARYVKRCMGGG 99
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 578 PLSTVAPHLTCSTLYVMLCIGGLTREFPCDDQVLGGPQKLRARTATPCRS 429
P + +P + V + GLTR+FPC + + KL R A +S
Sbjct: 272 PKISKSPSFIQEEIEVAEVLFGLTRQFPCPSKPVESNHKLEVRDAPEAKS 321
>03_02_0522 +
9103357-9103437,9103538-9103592,9103687-9103739,
9103832-9104060,9104149-9104284,9104448-9104496,
9105123-9105248,9106003-9106110,9106255-9106395
Length = 325
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = -1
Query: 572 STVAPHLTCSTLYVMLCIGGLTREFPCDDQVLGG---PQKLRARTATPCRSRVSE 417
+T+ LTCS + +G L R PC Q P + T C+ RVS+
Sbjct: 214 NTLEDELTCSVCLEQVVVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVCKHRVSD 268
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 191 RTAGSVPRRRSPARSEGW 138
R AGS R RSP++S GW
Sbjct: 66 RAAGSAARTRSPSQSNGW 83
>12_01_0567 +
4641223-4641326,4641700-4642440,4642534-4642735,
4642830-4643285,4643382-4643774,4643868-4643870,
4645366-4645417,4645929-4646023
Length = 681
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +2
Query: 389 HVDYLMANDAPRLLNDKVLQFLLAAFADHQGPDRHMGTRESVRQYKASRKVLNT*GGG 562
+ D+ + + R + D +L +L + + D H+G + + ++A+R V GGG
Sbjct: 86 YADHTASGRSLRYIEDYLLNEVLPFYGNTHTEDSHVGRKMTRLMHRAARYVKRCMGGG 143
>08_02_1266 - 25721277-25721354,25721429-25722236,25724215-25724567
Length = 412
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 273 MGRVILRRSYSGGVSELYIIILLVGP*SNCWK 178
+ R LR S+SGG S IL +G +CWK
Sbjct: 318 VARHFLRSSHSGGESRAGHEILTLGDGEDCWK 349
>04_03_0744 +
19237901-19237912,19238119-19238611,19238860-19238928,
19239124-19239140,19239260-19239357,19240019-19240156,
19240710-19240899,19241175-19241307,19241505-19242442
Length = 695
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/17 (52%), Positives = 16/17 (94%)
Frame = +1
Query: 472 PPRT*SSHGNSRVSPPI 522
PPR+ S+HG++R++PP+
Sbjct: 52 PPRSSSTHGSARLTPPL 68
>03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835
Length = 379
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 626 IGLISLFHSCRGHIDTWSNYTS 691
+GL + H RG +D W NYT+
Sbjct: 337 VGLGAKMHDLRGVLDVWRNYTA 358
>01_05_0627 +
23802235-23802853,23803357-23803430,23804207-23804364,
23804640-23804964
Length = 391
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = -1
Query: 206 WWVRSRTAGSVPRRRSPARSE-----GWSSW 129
WW RSR A +V SP R WSSW
Sbjct: 77 WWRRSRMAAAVAVTSSPPRPSTSPRLSWSSW 107
>03_05_0935 -
28948368-28948769,28949028-28949120,28949240-28949329,
28949413-28949477,28950442-28950512,28950610-28950648,
28950832-28951250
Length = 392
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +2
Query: 251 LRKITLPIYLLYSRNDLLSSEQDVDKLYQD 340
L +IT+P+ +++ +D+++ Q KLY++
Sbjct: 324 LHRITVPMLVMHGADDMVTDPQGSQKLYEE 353
>01_06_1830 + 40194257-40194472,40195797-40196159,40196420-40196950
Length = 369
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 626 IGLISLFHSCRGHIDTWSNYTS 691
+GL + H R +D W+NYTS
Sbjct: 313 VGLGNKLHDLRSALDQWANYTS 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,594,079
Number of Sequences: 37544
Number of extensions: 469226
Number of successful extensions: 1400
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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