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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0014
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0719 + 20388246-20390756,20391159-20391263                       31   0.37 
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734...    29   1.5  
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91...    29   2.6  
01_01_0051 + 389051-389623                                             28   3.5  
11_06_0147 - 20626854-20627181,20627267-20627377,20627461-206278...    27   6.0  
05_06_0180 + 26173452-26173692,26174456-26174698,26174796-261750...    27   6.0  
03_06_0118 + 31795050-31796404,31796513-31797083                       27   6.0  
03_05_0964 - 29254947-29256183,29256275-29256381                       27   6.0  
06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,813...    27   8.0  
06_01_0518 + 3750996-3751424                                           27   8.0  
03_05_0758 + 27491778-27492088,27492996-27493113                       27   8.0  
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221...    27   8.0  
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446...    27   8.0  

>08_02_0719 + 20388246-20390756,20391159-20391263
          Length = 871

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 23/78 (29%), Positives = 36/78 (46%)
 Frame = -2

Query: 443 RRLQFQMSQDVLRQNEVLSQISAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLRSETR 264
           RR+  Q+ +D  RQN  LS++  +F    + H  +    T   K++S   M G L  E  
Sbjct: 525 RRMSIQIEEDDFRQNVSLSKLQTLFISNKIPHVPKLLSSTTALKVLS---MQGSLIEEFP 581

Query: 263 TPVPPIASPRGDYSSLRD 210
             +  +   R  Y +LRD
Sbjct: 582 KEIGNLTHLR--YLNLRD 597


>01_02_0118 +
           11271020-11271293,11272849-11273145,11273226-11273439,
           11273563-11273672,11273746-11273945,11274439-11274501,
           11274560-11274663,11274868-11275055,11275129-11275328,
           11275463-11275693
          Length = 626

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 3   RTPVSIINIFICTYINSINSFTSLSTLR*GTVN*QLNK 116
           R  + I N+F C + N ++ FTS   L   TV  ++ K
Sbjct: 493 REHIPITNLFTCLWFNEVDRFTSRDQLSFSTVRDKIRK 530


>05_01_0135 +
           908803-909059,913133-913187,913499-914047,914140-914365,
           914446-914906
          Length = 515

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 105 QLNKILSCWMLLNWKCRTESSDFFYCHIVWRAVGPVSER 221
           Q+  +++C  L NW       ++ Y H  W  V P S R
Sbjct: 441 QVKTVIACCTLHNWILDNGDDEYVYDHETWYRVLPRSNR 479


>01_01_0051 + 389051-389623
          Length = 190

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 22/79 (27%), Positives = 39/79 (49%)
 Frame = -1

Query: 351 TSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAKQYDNRK 172
           +S+S  +    + +  S++   +SS  +++SSS   L  RR    P P  Q+ K+     
Sbjct: 101 SSSSESSSSSSSSSSESSSSSSSSSSESSSSSSDDDLARRRQQRNPSPPPQYKKEARRSP 160

Query: 171 NRSIPYDISSLKASNS*GS 115
           + S P   S+  +S+S GS
Sbjct: 161 SPSPPSSSSTSSSSSSSGS 179


>11_06_0147 -
           20626854-20627181,20627267-20627377,20627461-20627846,
           20627949-20628057,20629375-20629421,20629506-20629646
          Length = 373

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 303 SNAYDRASSFGNTNSSSAHCLTT 235
           +N    A+S GNT++SSA C+TT
Sbjct: 347 NNPTTAATSSGNTSASSAPCVTT 369


>05_06_0180 +
           26173452-26173692,26174456-26174698,26174796-26175009,
           26175115-26175194,26175381-26175502,26175950-26176053,
           26176457-26176644,26176725-26176924,26177104-26177331
          Length = 539

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 3   RTPVSIINIFICTYINSINSFTSLSTLR*GTVN*QLNKILSCWM 134
           R  + I N+F C + N ++ FTS   +   TV  ++   +  WM
Sbjct: 407 REHIPITNLFTCLWFNEVDRFTSRDQISFSTVRDKIRARVG-WM 449


>03_06_0118 + 31795050-31796404,31796513-31797083
          Length = 641

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 122 QLLDAFKLEMSYGI-ERFFLLSYCLACCWPGLGAKNNLRVVRQWAELEFVFP 274
           +++DA +L  +Y I E   +L   L C  P  GA+ ++R V Q+ E +  FP
Sbjct: 544 KVIDA-RLHGNYNIDEAILVLKLGLLCSHPLPGARPSMRQVVQYLEGDMPFP 594


>03_05_0964 - 29254947-29256183,29256275-29256381
          Length = 447

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 242 RQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDV 346
           R+W     +FP+E+ +S+   + F   GS+  +D+
Sbjct: 174 RRWGTRRPIFPSEKPKSFTAHQTFSFQGSAYWVDL 208


>06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,
            8135179-8135256,8135442-8135697,8136427-8136515,
            8137229-8137376,8137460-8137899,8138048-8138562,
            8138791-8139061,8139231-8139492,8139583-8139938
          Length = 1004

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 350  HRHQSAPRTQVRKIVSLMHMTGLLRSETRTPVPPIASPRG-DYSSLRDRANSTPNN 186
            H  +  P+ +  +I   + +    R ET + VPP  +PR       R RA  +P++
Sbjct: 872  HPEEELPQDEAEEIFKKLGLDAGFRLETNSVVPPTPAPRSVRPPPSRRRARRSPSS 927


>06_01_0518 + 3750996-3751424
          Length = 142

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 309 RFSNAYDRASSFGNTNSSSAHCLTTRRL 226
           R SNAY+  +S  N+   + HC   R L
Sbjct: 17  RVSNAYNSGASSSNSTGDTKHCRIMREL 44


>03_05_0758 + 27491778-27492088,27492996-27493113
          Length = 142

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 299 MHMTGLLRSETRTPVPPIASPRGD 228
           +H+ G   S +  P P +A+PRGD
Sbjct: 36  VHLAGGTASSSSAPGPAVATPRGD 59


>03_05_0211 -
           22020515-22020687,22020801-22020831,22022060-22022169,
           22022715-22023102,22023344-22023397,22023739-22023849,
           22023956-22024015,22024618-22024694,22026155-22026188,
           22026267-22027235
          Length = 668

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 266 VFPNEEARSYALEKRFYVPGSSVPIDVDVQHR-SGKKSRIFVTIPRFDEGRPVTFGTVDD 442
           V   E  R++ +EK    P   +P    V HR S KK      +     GR     TVD 
Sbjct: 310 VIEKEPNRNFVVEKGRGTPLKDIP---SVAHRISRKKPADLKFLHNVLFGRKGK--TVDF 364

Query: 443 EGRIVAYPDYSWHE 484
           +G I+ +  + WHE
Sbjct: 365 KGHILQFSGFVWHE 378


>03_03_0186 +
           15243150-15243563,15243685-15243777,15244604-15244666,
           15245028-15245114,15245197-15245349,15245422-15245579,
           15246458-15246692,15246782-15246892,15246942-15246968,
           15247269-15248327,15248432-15248692,15249011-15249196,
           15249642-15250793,15250886-15251236,15251343-15251738
          Length = 1581

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 327 PRCRLMSMCNIGQVKNRGYL*QYLVLTKDV 416
           P+ R  S+CNIG +  R  L + L++  DV
Sbjct: 400 PKLRDFSLCNIGSIHKRADLAKKLLVLTDV 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,982,509
Number of Sequences: 37544
Number of extensions: 278674
Number of successful extensions: 762
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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