Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0002
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 47 1e-05
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 47 1e-05
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 38 0.006
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 31 0.69
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 1.2
03_01_0586 - 4339090-4339194,4340186-4340366,4340531-4340601,434... 29 2.8
01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702... 29 3.7
10_08_0854 + 21086253-21086258,21086320-21086480,21087065-210871... 28 4.9
10_08_0059 + 14529885-14530991 28 4.9
08_01_0686 + 6049563-6050900 28 6.5
03_02_0875 + 12038365-12039329,12039417-12039593,12039651-120398... 28 6.5
08_02_1479 + 27390852-27391059,27392017-27392138,27392227-273923... 27 8.5
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858... 27 8.5
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653... 27 8.5
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 46.8 bits (106), Expect = 1e-05
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Frame = +2
Query: 266 LTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVGLMNGHIPEH-CGGLG 442
LT+E+K LQ R+F ++E+ P+ ++ + E+P+ ++ K +G+ G I + C GL
Sbjct: 61 LTEEEKDLQIKVRQFMENEVAPIISKFWEKAEFPFHLIPKMSTLGIAGGTIKGYGCPGLS 120
Query: 443 LGVFEACILSEELAYGCSGIMAAVYITE-VGQTPIIIAGNKEQQKKYL 583
C L E+A + I + + + I G++ Q++KYL
Sbjct: 121 GPACAMCFL--EIARVDASIASFCLVQSCLAMVSIAQLGSEAQKEKYL 166
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 46.8 bits (106), Expect = 1e-05
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Frame = +2
Query: 272 DEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEV-GLMNGH---IPEHCGGL 439
D Q+ +E KF ++ I P A D + +P V W++ G N H PE GG+
Sbjct: 33 DTQEQFKESVHKFAQETIAPHAAAIDASNHFPKDV--NLWKLMGDFNLHGLTAPEEYGGM 90
Query: 440 GLGVFEACILSEEL--AYGCSGIMAAVYITEVGQTPIIIAGNKEQQKKYLGRL 592
GLG CI EE+ A G G+ + + + ++ G+ Q+ KYL +L
Sbjct: 91 GLGYMYHCIAMEEISRASGSVGLSYGAH-SNLCINQLVRHGSPAQKLKYLPKL 142
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 266 LTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVGLMNG 412
LTDE+K L++ R + EI P+ +Y + E+P+ + K +GL G
Sbjct: 47 LTDEEKTLRKKVRGIMEREIAPIMTEYWEKAEFPFHAIPKLATLGLAGG 95
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 31.1 bits (67), Expect = 0.69
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
PTS Y+ P + S S S + P P S P PTS A+ T GYSP
Sbjct: 1671 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1728
Query: 351 L-SY*PAT 331
SY P +
Sbjct: 1729 SPSYSPTS 1736
Score = 30.7 bits (66), Expect = 0.92
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = -1
Query: 540 GV*PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGY 361
G PTS Y+ A P + S S S T P P S P PTS ++ T Y
Sbjct: 1563 GYSPTSPSYSPAS-PSYSPTSPSYT-PGSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1620
Query: 360 SPVL-SY*PAT 331
SP SY P +
Sbjct: 1621 SPTSPSYSPTS 1631
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
PTS Y+ P + S S S + P P S P PTS A+ T YSP
Sbjct: 1608 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPT 1665
Query: 351 L-SY*PAT 331
SY P +
Sbjct: 1666 SPSYSPTS 1673
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTP--KPRPPQCSGMCPFIRPTSQAFFTTGHGYS 358
PTS Y+ P P S + + +P P P S P PTS ++ + YS
Sbjct: 1699 PTSPSYS----PTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYS 1754
Query: 357 PVLSY*PATGMISSF 313
P +Y P++ +S +
Sbjct: 1755 PSHAYSPSSPRLSPY 1769
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSP 355
PTS +Y+A P SS + S + P P S P PTS A+ T Y+P
Sbjct: 1643 PTSPIYSATSPIYSP--SSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYNP 1699
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
PTS Y+ P + S S S + P P S PTS A+ T GYSP
Sbjct: 1740 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPT 1797
Query: 351 L-SY*PAT 331
SY P++
Sbjct: 1798 SPSYSPSS 1805
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPK--PRPPQCSGMCPFIRPTSQAFFTTGHGYS 358
PTS Y + P P S + + +P P P S P PTS A+ T YS
Sbjct: 1731 PTSPSYNYS--PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYS 1788
Query: 357 P 355
P
Sbjct: 1789 P 1789
>03_01_0586 -
4339090-4339194,4340186-4340366,4340531-4340601,
4340689-4340826,4341342-4342337
Length = 496
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -2
Query: 488 RRPAPRSKYRPRTLLNLDLRNVLECVRSLGQLPKPSLQR--ATGTPPSYHIDPPQE*FHP 315
R P P K++P T N+D V+ + Q KP+L+ AT P S P P
Sbjct: 189 RSPVPNVKFQPVT--NVDAERVINNINDAVQEAKPTLENKAATDEPDSVSTFEPNSVIEP 246
>01_06_1827 +
40169001-40169263,40169358-40169472,40170090-40170201,
40170556-40170623,40170798-40170852,40170948-40171027,
40171811-40171924,40172178-40172296,40173064-40173181,
40173264-40173394,40173535-40173688,40173922-40174017
Length = 474
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 344 IDPPQE*FHPS*IYALVPEALSAHRLIRNKS 252
+DPP++ HPS I AL ALS + + KS
Sbjct: 362 VDPPRKGLHPSVICALQKVALSERKAYKAKS 392
>10_08_0854 +
21086253-21086258,21086320-21086480,21087065-21087175,
21087275-21087329,21087796-21087963,21088232-21090082,
21090355-21090690
Length = 895
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 455 RTLLNLDLRNVLECVRSLGQLPKPSLQRATGTPPSYHIDPP 333
+ LL +++ ++E V + K + +R TPPS +DPP
Sbjct: 848 KMLLKDEVKQLIESVTTKENKKKKTKRRKEKTPPSIVLDPP 888
>10_08_0059 + 14529885-14530991
Length = 368
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 559 ISSNNDGSLTNFGDVHRCHDTRASVGQLLAQNTGLE 452
I +++ ++ F D H CH RA+ + L+ T L+
Sbjct: 307 IGASSVATMLTFADRHHCHGLRAACTEFLSSPTNLK 342
>08_01_0686 + 6049563-6050900
Length = 445
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -2
Query: 344 IDPPQE*FHPS*IYALVPEALSAHRLIRNK 255
IDPP FH S +Y V E LS L NK
Sbjct: 310 IDPPPTVFHQSWLYVSVDERLSLLYLCDNK 339
>03_02_0875 +
12038365-12039329,12039417-12039593,12039651-12039893,
12040045-12040124,12040242-12040508,12040599-12040710,
12040757-12041071,12041357-12041366
Length = 722
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 507 AMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQA 385
A++P ASSS + A+++P Q SG CP P+S A
Sbjct: 62 ALLPPPQAASSSPTVPAAHSPFLLSRQNSGRCPAPSPSSWA 102
>08_02_1479 +
27390852-27391059,27392017-27392138,27392227-27392350,
27392641-27392702,27392778-27392859,27393338-27393410,
27397092-27397227,27397337-27397386,27397542-27397590,
27398352-27398831
Length = 461
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = -1
Query: 549 IMMGV*PTSVMYTAAMIPEHP*ASSSLK--IQASNTPKPRPPQCSGMCPFIRPTSQ-AFF 379
+++G+ P + A++ P HP + +LK ++PKP P + + P + ++ A
Sbjct: 353 MLLGMGPDG--HVASLFPGHPVVNENLKWVSYIKDSPKPPPERITFTFPLVNSSAHIALV 410
Query: 378 TTGHG 364
TG G
Sbjct: 411 VTGAG 415
>07_03_0446 -
18285132-18285221,18285437-18285499,18285805-18285867,
18286079-18286129,18286413-18286506,18286696-18286856,
18287089-18287145,18287380-18287493,18287934-18287999,
18288063-18288266,18289207-18289284,18289669-18289788,
18290425-18290491,18290635-18290735,18290820-18290936,
18292024-18292107,18292181-18292309,18292385-18292510,
18292622-18292696,18292814-18292947,18293032-18293137,
18293220-18293276,18294387-18294573,18295244-18295407,
18296129-18296353,18296538-18296744,18297043-18297375,
18297604-18297993
Length = 1220
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 510 AAMIPEHP*ASSSLKIQASNTPKPRPPQ 427
A+ +P HP SSSL + P P PPQ
Sbjct: 8 ASPLPLHPGGSSSLLPRKRPPPSPPPPQ 35
>02_04_0640 -
24664841-24664855,24664895-24664978,24665232-24665319,
24665457-24667318
Length = 682
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 170 VRATRPIYRKLXXXXXXXXXXKPIPTTGFCFELTDEQKALQELA 301
VR TRP YR L +P GF F + AL +A
Sbjct: 294 VRGTRPDYRSLVPSSILNHTICTVPVHGFGFGADHDSDALHSIA 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,289,712
Number of Sequences: 37544
Number of extensions: 321252
Number of successful extensions: 863
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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