Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0001
(367 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 32 0.16
12_01_0116 - 884400-884783,887864-888031,888285-888479,888668-88... 31 0.37
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286... 31 0.37
11_01_0109 - 843748-843851,844655-844940,845390-845557,845812-84... 29 0.85
01_05_0742 - 24829151-24829307,24829894-24830136,24830175-24830251 29 1.1
07_03_1005 + 23249040-23249228,23250453-23250574,23250654-232508... 28 2.6
03_01_0496 + 3745631-3745688,3746074-3746250,3746590-3746759,374... 27 3.4
07_03_1724 + 29056386-29056717,29057026-29057245,29057334-290575... 27 4.5
05_03_0294 + 11818391-11820268,11820332-11820550,11820752-118216... 27 4.5
04_03_0585 + 17570853-17571404 27 6.0
06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489 26 7.9
03_04_0087 - 17206053-17206175,17206543-17206677 26 7.9
02_05_0295 + 27621076-27621300,27623389-27623486,27624600-276248... 26 7.9
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 31.9 bits (69), Expect = 0.16
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +1
Query: 115 NKQHASGEWSQSTNILKRTGSSSARRKLHNSNSWMSRQTSHRPPRLSSGASY--ISAWIT 288
N ++ WS + + G S +NS++W S T SS +SY SAW +
Sbjct: 744 NNNGSNNAWSSTRDY--DNGGRSDNNPYYNSSTWSSNSTYSNNAAWSSNSSYNSNSAWSS 801
Query: 289 KSNYRQIS 312
S+Y S
Sbjct: 802 NSSYNSNS 809
>12_01_0116 -
884400-884783,887864-888031,888285-888479,888668-888793,
888900-889082,889633-889755
Length = 392
Score = 30.7 bits (66), Expect = 0.37
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 142 SQSTNILKRTGSSSARRKLHNSNSWMSRQT--SHRPPRLSSGASYISAWITK 291
++++NI++ T RRK NSNS+M + RPP LS + +A T+
Sbjct: 152 NKTSNIIEETKKIQIRRKQANSNSYMPNPAFDTLRPPNLSHDQAETAAQETQ 203
>03_01_0369 -
2863159-2863491,2864149-2864214,2865045-2865140,
2865530-2865632,2865771-2865838,2866570-2866712,
2867050-2867242,2867602-2867640,2867742-2867807,
2868617-2869651
Length = 713
Score = 30.7 bits (66), Expect = 0.37
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +2
Query: 182 VPAESYTTAIPGCHVKLRIAPRGLAAEPPISVPGLLSRTTARYPNATALATKKADGK 352
VPA Y G + LR P +A++P +S+ LL R P+A ALA A G+
Sbjct: 6 VPAAGY--GADGVYRSLR-PPAPVASDPGLSLTDLLLRRADACPSAVALADAAAGGR 59
>11_01_0109 -
843748-843851,844655-844940,845390-845557,845812-846006,
846195-846320,846427-846589,847363-847388
Length = 355
Score = 29.5 bits (63), Expect = 0.85
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 142 SQSTNILKRTGSSSARRKLHNSNSWMSRQT--SHRPPRLSSGASYISAWITK 291
++++NI++ T RRK NSNS++ + RPP LS+ + +A T+
Sbjct: 113 NKTSNIIEETKKIQIRRKQANSNSYVPNLAFDTLRPPNLSNDQAETAAQETQ 164
>01_05_0742 - 24829151-24829307,24829894-24830136,24830175-24830251
Length = 158
Score = 29.1 bits (62), Expect = 1.1
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 142 SQSTNILKRTGSSSARRKLHNSNSWMSRQTSHRPPR-LSSGASYISAW 282
++ T L+ T + + RKL S SW ++ T PPR LSS ++ S+W
Sbjct: 31 ARGTPTLENTVPTPSSRKLEASASWANQST---PPRWLSSASAPPSSW 75
>07_03_1005 +
23249040-23249228,23250453-23250574,23250654-23250800,
23250932-23250998,23251763-23251836,23252010-23252102,
23253433-23253550,23254340-23254402,23254774-23254806,
23255325-23255399
Length = 326
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 233 RIAPRGLAAEPPISVPGLLSRTTARYPNATALATK 337
R APR L PP + P LLS +AR+P A A +
Sbjct: 22 RPAPRLLGPPPPPASP-LLSSASARFPRAPCNAAR 55
>03_01_0496 +
3745631-3745688,3746074-3746250,3746590-3746759,
3747094-3747192,3747308-3747376,3747611-3747751,
3747935-3748024,3748123-3748290,3748375-3748450,
3748612-3748736
Length = 390
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 95 GATDTLKTNNMQVANGVSQQIYLNGPDQVVPAESYTTAIPGC 220
G + ++ +N++V N V I G QV+PAE+ A GC
Sbjct: 111 GELELIQPDNVEVENIV---IDFRGGWQVIPAENIVAAFQGC 149
>07_03_1724 +
29056386-29056717,29057026-29057245,29057334-29057530,
29057628-29057988
Length = 369
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +2
Query: 110 LKTNNMQV--ANGVSQQIYLNGPDQVVPAE---SYTTAIPGCHVKL 232
L+ N++ A GV Q+ G DQVVPAE +PG ++L
Sbjct: 281 LQDRNLEAVEAAGVPVQVIHGGDDQVVPAECGRHLKAKLPGAELRL 326
>05_03_0294 +
11818391-11820268,11820332-11820550,11820752-11821644,
11829889-11829905,11829927-11830183
Length = 1087
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 288 SNPGTDIGGSAAKPRGAMRSLT 223
+ PG + GG A +P G RSLT
Sbjct: 932 TRPGREQGGEAPEPNGGPRSLT 953
>04_03_0585 + 17570853-17571404
Length = 183
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 315 LGYLAVVRLSNPGTDIGGSAAKPRGAMRSLT*H 217
L VV +S PG G P GA+RS T H
Sbjct: 10 LAIAGVVLVSLPGLSRGDGECNPSGAIRSSTTH 42
>06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489
Length = 282
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +1
Query: 130 SGEWSQSTNILKRTGSSSARRKLHNSNSWMSRQTSHRPPRLSSGASYISA 279
S S++ ++L+RT S+ +RR H+S++ + PR + A+ S+
Sbjct: 2 SSSASRAASLLRRTSSALSRRCAHSSSAAAPSRPPVPLPRFRAAAAAASS 51
>03_04_0087 - 17206053-17206175,17206543-17206677
Length = 85
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 215 GCHVKLRIAPRGLAAEPPI 271
GC V ++ PR +AAEPP+
Sbjct: 29 GCGVVGQVEPRRVAAEPPV 47
>02_05_0295 +
27621076-27621300,27623389-27623486,27624600-27624816,
27625030-27625122
Length = 210
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 203 TAIPGCHVKLRIAPRGLAAEPPI-SVPGLLS 292
T P C + L+ P G AE P+ S+P L S
Sbjct: 145 TTCPICRISLKDLPSGKPAESPVRSLPQLFS 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,558,752
Number of Sequences: 37544
Number of extensions: 207767
Number of successful extensions: 635
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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