Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A23
         (951 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1751 - 29215074-29216270                                         30   3.1  
07_03_1012 + 23295976-23296264,23296475-23296548,23296972-232969...    29   4.1  
06_02_0175 - 12624608-12625297                                         29   4.1  
03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508...    29   5.4  
08_01_0347 + 3074093-3074410                                           29   7.2  
11_03_0007 + 8892616-8892760,8893073-8893206,8893496-8893695,889...    28   9.5  
08_01_0202 - 1638978-1639571                                           28   9.5  

>07_03_1751 - 29215074-29216270
          Length = 398

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = -2

Query: 950 GGGXGXGXXGXKGGGRWGCX*XGGXXVXYTGXXVXGXXG 834
           GGG G G  G KGGG  G    GG      G  + G  G
Sbjct: 108 GGGVGGGFGGGKGGGLGGGGGLGGGGGGGAGGGLGGGAG 146


>07_03_1012 +
           23295976-23296264,23296475-23296548,23296972-23296996,
           23297486-23297568,23297653-23297685,23298322-23298469,
           23298625-23298722
          Length = 249

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 950 GGGXGXGXXGXKGGGRW 900
           GGG G G  G  GGGRW
Sbjct: 27  GGGGGGGSGGGGGGGRW 43


>06_02_0175 - 12624608-12625297
          Length = 229

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
 Frame = -2

Query: 950 GGGXGXGXXGXKGGGR---WGC 894
           GGG G G  G  GGGR   WGC
Sbjct: 112 GGGGGGGGGGGGGGGRRCWWGC 133


>03_06_0412 +
           33749039-33749077,33749585-33749728,33750110-33750862,
           33750959-33751778,33751893-33752140,33752285-33752391,
           33753098-33753248,33753339-33753530,33753905-33754042
          Length = 863

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 147 MSACGQFSRRFNNNRRDVIGQRQ*LHSC 230
           MSACG  S RF+ N   + G  Q  HSC
Sbjct: 1   MSACGYHSPRFSENCAFIGGPAQEQHSC 28


>08_01_0347 + 3074093-3074410
          Length = 105

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 950 GGGXGXGXXGXKGGGRWGCX*XGGXXV 870
           GGG G G  G +GGG   C   GG  V
Sbjct: 45  GGGSGRGVGGCEGGGGGKCEEEGGRVV 71


>11_03_0007 +
           8892616-8892760,8893073-8893206,8893496-8893695,
           8893809-8894090,8894185-8894243,8894345-8894381,
           8894501-8894723,8894818-8894964,8895845-8895892
          Length = 424

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 337 LSSQPLN*LDSFTCIRLHYNLFVQIVISKRINLRC*QLCNYCL 209
           L S+ +N L++ T + +  NLF  + +     LR  +LCN C+
Sbjct: 246 LVSKGINILEAVTILTVTLNLFAVLALLVMRPLRLQKLCNLCI 288


>08_01_0202 - 1638978-1639571
          Length = 197

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 950 GGGXGXGXXGXKGGGRWGCX*XGGXXVXY 864
           GGG G G  G  GGG +G    GG    Y
Sbjct: 110 GGGYGGGDRGYGGGGGYGGGGGGGSRACY 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,314,977
Number of Sequences: 37544
Number of extensions: 286286
Number of successful extensions: 2008
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1641
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)