SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A18
         (961 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817...   167   2e-41
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248...   160   2e-39
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392...   155   5e-38
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554...   154   1e-37
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227...    87   3e-17
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249...    28   9.6  
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689...    28   9.6  
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    28   9.6  
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045...    28   9.6  

>07_01_0971 +
           8169197-8169311,8170351-8170458,8170533-8170725,
           8170811-8171069,8171151-8171207,8171433-8171480,
           8171571-8171657,8171743-8171800,8171891-8171958,
           8172066-8172161,8172244-8172291,8172658-8172696,
           8172782-8172868,8173136-8173147
          Length = 424

 Score =  167 bits (405), Expect = 2e-41
 Identities = 82/146 (56%), Positives = 105/146 (71%), Gaps = 2/146 (1%)
 Frame = +1

Query: 148 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL 321
           +VFF+EKF +D WES WV SE    E   G++  T+GK+  DPED KG++TSED RFYA+
Sbjct: 30  EVFFQEKF-EDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDPED-KGIQTSEDYRFYAI 87

Query: 322 SRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDIC 501
           S ++  FSN+ K LV+QF+VKHEQ +DCGGGY+K+    ++QK   G+TPY IMFGPDIC
Sbjct: 88  SAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSIMFGPDIC 147

Query: 502 GPGTKKVHVIFSYKGKNXLXSKKYIP 579
           G  TKKVH IF+   KN L  KK +P
Sbjct: 148 GYSTKKVHTIFTKNDKNHLI-KKDVP 172



 Score = 40.7 bits (91), Expect = 0.002
 Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = +2

Query: 710 LPPXKIXDP*SPXTXXTXDDXPLFXTPXTXXPEDWDK-PEXXPXPXAPXPEXWDXXNXXX 886
           LPP +I DP         DD      P    PE +D  P+  P P A  PE WD      
Sbjct: 213 LPPKQIKDP-EAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDWDDEEDGE 271

Query: 887 XGTPPXIXPPXXKG 928
             T P I  P  KG
Sbjct: 272 W-TAPTIPNPEYKG 284


>01_06_1654 -
           38924090-38924101,38924183-38924215,38924737-38924829,
           38924909-38924965,38925048-38925143,38925237-38925304,
           38925429-38925486,38925572-38925658,38925935-38925982,
           38926060-38926116,38926200-38926458,38926666-38926858,
           38926991-38927098,38927849-38927957
          Length = 425

 Score =  160 bits (388), Expect = 2e-39
 Identities = 73/137 (53%), Positives = 100/137 (72%), Gaps = 2/137 (1%)
 Frame = +1

Query: 148 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL 321
           +V FEE+F +D WES WV S+    E   G FK TAG++  DP DDKG++T+ DAR +A+
Sbjct: 28  EVIFEERF-EDGWESRWVKSDWKRSEGKAGTFKHTAGRYSGDP-DDKGIQTTLDARHFAI 85

Query: 322 SRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDIC 501
           S K   FSN+G+ LV+Q+++K EQDI+CGGGY+K+    + QK   G+TPY +MFGPDIC
Sbjct: 86  SAKIPEFSNKGRTLVLQYSIKFEQDIECGGGYIKLMSGYVNQKKFSGDTPYSLMFGPDIC 145

Query: 502 GPGTKKVHVIFSYKGKN 552
           G  TKK+H+I SY+G+N
Sbjct: 146 GTQTKKLHLILSYQGQN 162


>03_06_0563 -
           34738732-34738890,34738965-34739009,34739154-34739201,
           34739291-34739386,34739467-34739534,34739633-34739690,
           34739783-34739869,34740004-34740051,34740360-34740416,
           34740525-34740783,34740877-34741102,34741168-34741275,
           34741885-34741987
          Length = 453

 Score =  155 bits (376), Expect = 5e-38
 Identities = 79/156 (50%), Positives = 102/156 (65%), Gaps = 12/156 (7%)
 Frame = +1

Query: 148 DVFFEEKFPDDSWESNWVYSE--HPGKEFGKFKLTAGKFFSDPEDD----------KGLK 291
           +VFF+EKF DD WE  WV SE        G++  T+GK++ D +D            G++
Sbjct: 26  EVFFQEKF-DDGWEDRWVKSEWKKDDNRAGEWNHTSGKWYGDADDKGMCEVTLLLCAGIQ 84

Query: 292 TSEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETP 471
           TSED RFYA+S K+  FS++ K LV+QF+VKHEQ +DCGGGY+K+    ++QK   GETP
Sbjct: 85  TSEDYRFYAISAKYPEFSSKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGETP 144

Query: 472 YEIMFGPDICGPGTKKVHVIFSYKGKNXLXSKKYIP 579
           Y IMFGPDICG  TKKVH I +  GKN L  KK +P
Sbjct: 145 YSIMFGPDICGYATKKVHAILTKNGKNHLI-KKDVP 179



 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 788 PXTXXPEDWDKPEXXPXPXAPXPEXWD 868
           P    PEDWD  E  P P    PE +D
Sbjct: 228 PEAKKPEDWDDNEYIPDPEDKKPEGYD 254


>05_06_0014 +
           24854462-24854570,24854958-24855065,24855240-24855432,
           24855892-24856150,24856236-24856292,24856370-24856417,
           24856725-24856811,24856885-24856942,24857084-24857151,
           24857279-24857374,24857483-24857539,24857906-24857952,
           24858184-24858210,24858312-24858504
          Length = 468

 Score =  154 bits (373), Expect = 1e-37
 Identities = 71/140 (50%), Positives = 98/140 (70%), Gaps = 2/140 (1%)
 Frame = +1

Query: 139 INCDVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARF 312
           ++ +V FEE+F DD W S WV S+    E   G FK TAG +  DP DD+G++T+ DA+ 
Sbjct: 25  VSGEVIFEERF-DDDWGSRWVKSDWKKSEGKAGTFKHTAGSYSGDP-DDRGIQTTSDAKH 82

Query: 313 YALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGP 492
           +A+S KF  FSN+ + LVVQ+++K EQDI+CGG Y+K+    + QK   G+TPY  MFGP
Sbjct: 83  FAISAKFPEFSNKNRTLVVQYSIKIEQDIECGGAYIKLMSGYVNQKKFGGDTPYSFMFGP 142

Query: 493 DICGPGTKKVHVIFSYKGKN 552
           DICG  TKK+H+I SY+G+N
Sbjct: 143 DICGDQTKKLHLILSYQGQN 162



 Score = 33.5 bits (73), Expect = 0.26
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
 Frame = +2

Query: 710 LPPXKIXDP*SPXTXXTXDDXPLFXTPXTXXPEDWDK-PEXXPXPXAPXPEXWDXXNXXX 886
           LPP KI +  +       DD      P    PE +D  P+  P P    PE WD  +   
Sbjct: 211 LPPRKIKES-NAKKPKDWDDREYIEDPDEVKPEGYDSIPKEIPDPKDKKPESWDDDDDGV 269

Query: 887 XGTPPXIXPPXXKG 928
              P  I  P  KG
Sbjct: 270 W-KPRMIPNPEYKG 282


>04_03_0812 -
           19922208-19922357,19922448-19922564,19922681-19922752,
           19922864-19923993,19924939-19925008,19925125-19925199
          Length = 537

 Score = 86.6 bits (205), Expect = 3e-17
 Identities = 61/162 (37%), Positives = 84/162 (51%), Gaps = 4/162 (2%)
 Frame = +1

Query: 148 DVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSR 327
           D  F E F D+S+E  WV S   GK+  K      K  SD  +D GL  SE A+ YA+ +
Sbjct: 24  DPLFYEPF-DESFEGRWVLS---GKDDYKGVWKHEK--SDGHEDYGLLVSEKAKKYAIIK 77

Query: 328 KF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPD 495
           +  +P + +   +V+QF V+ +  ++CGG YLK     D   + K+   ETPY IMFGPD
Sbjct: 78  ELDEPVTLKDGTVVLQFEVRLQNGLECGGAYLKYIRPQDAAWDAKEFDNETPYTIMFGPD 137

Query: 496 ICGPGTKKVHVIFSYKGKNXLXSKKYIPXXKNDVYPTFVPSD 621
            CG  T KVH I  +K      + KY+       +P  VP D
Sbjct: 138 KCG-STNKVHFILKHKNPK---TGKYVEHHLK--FPPSVPYD 173



 Score = 33.1 bits (72), Expect = 0.34
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 788 PXTXXPEDWDKPEXXPXPXAPXPEXWD 868
           P    PEDWD+    P P A  P+ WD
Sbjct: 222 PDDKKPEDWDERAKIPDPDAVKPDDWD 248



 Score = 31.1 bits (67), Expect = 1.4
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = +2

Query: 722 KIXDP*SPXTXXTXDDXPL-FXTPXTXXPEDW--DKPEXXPXPXAPXPEXWD 868
           KI DP +       +D P+         PE W  D+PE    P A  PE WD
Sbjct: 235 KIPDPDAVKPDDWDEDAPMEIEDEEATKPEGWLDDEPEEIDDPEANKPEDWD 286


>11_06_0767 +
           27121761-27123335,27123701-27123910,27124843-27124911,
           27125387-27125656,27126027-27126377,27126480-27126757,
           27126887-27128330
          Length = 1398

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -3

Query: 497 MSGPNIISYGVSPCMSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGL 354
           M GP ++   ++P     S +Q + +++     +SC+CL    T+KGL
Sbjct: 674 MLGPTVLV--LAPTRELASQIQDEAVKFGRSSRVSCTCL-YGGTSKGL 718


>09_02_0286 -
           6898041-6898144,6898881-6899005,6899158-6899207,
           6899245-6899386,6899951-6900020,6900077-6900216,
           6900291-6900365,6901083-6904723
          Length = 1448

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -3

Query: 404 QSMSCSCLTVNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPAVNLNFPN 225
           +S+    L+ N  + G+P  L GLN      +++++ +  P+ SSG L  FP    +  N
Sbjct: 738 KSIGALDLSNNQLSGGIPPGLGGLNFLADF-DVSNNNLTGPIPSSGQLTTFPPSRYDNNN 796

Query: 224 SFPGCSL 204
              G  L
Sbjct: 797 GLCGIPL 803


>08_02_0672 -
           19904353-19904839,19905646-19905704,19906137-19906352,
           19906845-19907422,19907506-19908180,19908263-19908653,
           19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 21/69 (30%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
 Frame = +2

Query: 713 PPXKIXDP*SPXTXXTXD-DXPLFXTPXTXXPEDWDKPEXXPXPXAPXPEXWDXXNXXXX 889
           PP    DP  P T  T     P    P T  P +   P   P P  P P           
Sbjct: 6   PPPDGLDP-PPATPPTAAAGTPPLAVPATNTPPN---PATTPTPLTPNPNPSPTLPPPPM 61

Query: 890 GTPPXIXPP 916
            TPP + PP
Sbjct: 62  STPPVVAPP 70


>06_03_1275 +
           28903961-28904123,28904225-28904322,28904406-28904550,
           28904690-28904814,28904957-28905049,28905297-28905362,
           28905459-28905524,28905790-28905870,28905947-28906123,
           28906212-28906287,28906394-28906521,28906639-28906950
          Length = 509

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 184 TNHQETSPQRIHHNLSKIMPA-S*QRPVQQLSFSIHS 77
           TNH E  P+  H  LSKI+ A S  RP+  +S+ +H+
Sbjct: 41  TNHVERPPKERH--LSKIIAAASGARPLADVSYCVHA 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,846,828
Number of Sequences: 37544
Number of extensions: 452137
Number of successful extensions: 1075
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2776393380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -