Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A24
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0207 + 11675204-11676542,11676829-11676962,11677171-116774...    30   2.0  
11_06_0750 + 26917239-26918071,26918319-26920773                       30   2.7  
01_06_1820 + 40120861-40120863,40122484-40122612,40122710-401228...    29   4.7  

>11_03_0207 +
           11675204-11676542,11676829-11676962,11677171-11677411,
           11677508-11677719,11677837-11677883,11677988-11678090,
           11678594-11678830
          Length = 770

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/69 (21%), Positives = 32/69 (46%)
 Frame = +3

Query: 384 KKHLKVLIMATDITRQHDYLSRFKKLLDTNTLDMRIQEHRILVLQIALKCADISNPCRPW 563
           K+H K L + +++          +++LD   L    Q+   +V+ I +KC  + +  RP 
Sbjct: 680 KRHRKDLSVLSELVLSISKQEEREQVLDPVVLSTSSQDSLSMVISITVKCLSVESSARPS 739

Query: 564 SVSQKWSVK 590
                W+++
Sbjct: 740 IEEVLWNLQ 748


>11_06_0750 + 26917239-26918071,26918319-26920773
          Length = 1095

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 604 NSSQTLTLHFWLTDHGRHGLEMSAHFKAI*STRIRCSWILISSVFVSN 461
           N S   TL  ++TD G+  L++  H K +   ++ C  +  SS ++++
Sbjct: 773 NKSNLRTLAGFITDEGKGFLQLVGHMKKLRKVKVWCKHVAGSSNYIAD 820


>01_06_1820 +
           40120861-40120863,40122484-40122612,40122710-40122895,
           40123679-40123867,40124229-40124563,40124977-40125400
          Length = 421

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +2

Query: 254 PIQDTRRDIRELFRIGKPSLACRS*LHHRERSLGRKTRSPRRVEET 391
           PI+  R   RE   I +P+L  RS +HHR     RK +  RR  +T
Sbjct: 241 PIRYLRVVRRERLEISQPALDHRSQIHHRLTLRARKGQVHRRFYKT 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,710,255
Number of Sequences: 37544
Number of extensions: 448616
Number of successful extensions: 1129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)