Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_A23
(841 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 45 7e-05
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 40 0.002
02_04_0275 - 21469391-21470650 31 0.86
02_03_0049 + 14421408-14421942,14421988-14422842,14423847-144241... 31 1.5
11_04_0240 - 15246357-15246935,15247100-15247561 30 2.0
07_01_1078 - 9707125-9707640,9708091-9708306,9708312-9709685,970... 29 3.5
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 29 6.1
07_01_0986 - 8314733-8314783,8315895-8318381 28 8.1
03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729... 28 8.1
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 45.2 bits (102), Expect = 7e-05
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +1
Query: 370 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 546
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 97 RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 156
Query: 547 GPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVD 654
PI ++ + + + R E +QTGI +D
Sbjct: 157 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTID 192
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 39.9 bits (89), Expect = 0.002
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Frame = +1
Query: 370 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 546
+G L ++ + V VF G + + V+ TG ++ PV +LGRV + G PID
Sbjct: 57 RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNG 116
Query: 547 GPIDTK-----SRMRVGIKAPG--IIP--RVSVREPMQTGIKAVD 654
PI + S +G G I P R E +QTGI +D
Sbjct: 117 PPILPEAYLDISDFDIGFAGAGSSINPSERTYPEEMIQTGISTID 161
>02_04_0275 - 21469391-21470650
Length = 419
Score = 31.5 bits (68), Expect = 0.86
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 367 GLRRTPPSPQPGCSSSHKHERYHHQCSRHDQSLLDQP 257
G RRT + G SS+H H RY Q SRH + QP
Sbjct: 345 GTRRTAMATDVGTSSNH-HVRYRFQDSRHCHAAPQQP 380
>02_03_0049 +
14421408-14421942,14421988-14422842,14423847-14424151,
14424469-14424984
Length = 736
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +1
Query: 127 LPRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSXERILGAAPKADLEETGRVLSIGDGI 306
+PR + WR P LA + QP K P S P S +++ PKA I DGI
Sbjct: 412 MPRNRYWRTPVKSPVLAKKLEQPAQKRPSSAPKS-KKVWKEKPKAPAPPPPET-EIEDGI 469
Query: 307 A 309
+
Sbjct: 470 S 470
>11_04_0240 - 15246357-15246935,15247100-15247561
Length = 346
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 310 ERYHHQCSRHDQSLLDQPWARLQGSSLXRMVEISAALW 197
++YHH D S+ W ++ S L R +E + A W
Sbjct: 173 KKYHHYLGSGDYSIALPKWEEMEASLLKRGIEPATAKW 210
>07_01_1078 -
9707125-9707640,9708091-9708306,9708312-9709685,
9709704-9710044,9710120-9710198
Length = 841
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +1
Query: 127 LPRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSXERILGAAPKADLEETGRVLSIGDGI 306
+P+ + WR P + + QP K P SPP S + + G A + +L E R I
Sbjct: 635 MPKNRYWRTPVKSPVPSMKLEQPAQKKPSSPPKSKKGV-GFAHREELREECRRAFIPGVD 693
Query: 307 ARVYGLK 327
+ G+K
Sbjct: 694 SSTVGIK 700
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 578 SVLRRQVSFPGCLCVSLCRLVSRLLTLWXP 667
S+ R F CLC+SL +V+ L + W P
Sbjct: 271 SIFGRFPYFLPCLCISLLAIVALLASFWLP 300
>07_01_0986 - 8314733-8314783,8315895-8318381
Length = 845
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 163 PWHLANYMSQPPTKLPRSPPSSXERILGAAP 255
P HL++ S PP++ P SP R+L AAP
Sbjct: 27 PRHLSS--SSPPSQPPSSPAGELLRLLSAAP 55
>03_02_0308 -
7297228-7298008,7298495-7298576,7298612-7298669,
7298723-7298835,7298924-7299034,7299480-7299597,
7299706-7299809,7300570-7300665,7301806-7302307
Length = 654
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -1
Query: 412 PHPHCQVPS*GPFP*GLRRTPPSPQPGCSSSHKHERY--HHQCS 287
PH Q P P P PP +P S+SH H R+ HH S
Sbjct: 110 PHHQQQGPGASPSP---PPPPPRGRPSFSASHSHHRHGGHHHRS 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,910,168
Number of Sequences: 37544
Number of extensions: 514937
Number of successful extensions: 1640
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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