Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A21
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347     30   2.5  
03_02_0505 + 8981856-8982879,8983014-8983129,8985407-8985994,898...    29   3.3  
11_01_0154 + 1281434-1281725,1281923-1281987,1282112-1282175,128...    29   5.8  
06_03_0079 - 16301056-16301611,16301745-16301906,16306776-163071...    29   5.8  
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581...    29   5.8  
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186...    29   5.8  
03_02_0163 - 6056959-6058989                                           29   5.8  
02_04_0275 - 21469391-21470650                                         29   5.8  

>04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347
          Length = 137

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +3

Query: 63  ASLAVVAFAKEEKGTPKAVEEKKQDKR 143
           ASL  V  AKEEK   K  EEKK DK+
Sbjct: 65  ASLLSVGPAKEEKKEEKKPEEKKDDKK 91


>03_02_0505 +
           8981856-8982879,8983014-8983129,8985407-8985994,
           8986091-8986192
          Length = 609

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 617 LDFIRYFPFNGVRFRYVYWVFDVFLDGKGNFLFDGVGLRYG 495
           L ++ +FP++G    Y +W  +   D  G F FD   +  G
Sbjct: 43  LAYVAFFPYDGAGGLYRWWRCEGCGDAAGGFAFDEAAMAQG 83


>11_01_0154 +
           1281434-1281725,1281923-1281987,1282112-1282175,
           1282303-1282449,1282583-1282677,1284358-1284465
          Length = 256

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 129 SSLRLPSVCLSPPWQRQPRPTMPPK*PCTS 40
           +++  PS+  S P  R+P   +PP  PC+S
Sbjct: 3   AAVATPSLLFSSPTPRRPSSCLPPPPPCSS 32


>06_03_0079 -
           16301056-16301611,16301745-16301906,16306776-16307134,
           16307372-16307884
          Length = 529

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +2

Query: 47  HGYFGGIVGRGCL--CQGGERHTEGSRREETRQKG 145
           HGY GG  GRG      GG +  E + R E R +G
Sbjct: 335 HGYTGGADGRGQYRGSDGGRKDGEATPRREIRVRG 369


>06_01_0778 +
           5816588-5816885,5817554-5817615,5818764-5818905,
           5819969-5820064,5820147-5820266,5820401-5820663,
           5821507-5821617
          Length = 363

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 420 PSLPPQQF*CARGVHDDRGGSRLRWQL 340
           P LPP+   C   VH D GG+ +RW L
Sbjct: 247 PPLPPE---CNAQVHTDYGGAAVRWGL 270


>04_03_0286 +
           13915705-13915984,13916478-13917062,13918188-13918661,
           13918963-13920208,13920282-13920297
          Length = 866

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 20  ASFGXHNE-VHGYFGGIVGRGCLCQGG 97
           A    H++ + GYF  I+G  CLC GG
Sbjct: 247 ACISEHSKCMDGYFAPILGYNCLCDGG 273


>03_02_0163 - 6056959-6058989
          Length = 676

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 394 SKLLRW*RRCL-FRIQSRNTSPIPSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYT 570
           S LL W  R +    Q +N SP P+  +  ++       P P     P P R+++ ++Y 
Sbjct: 5   SSLLSWPHRAISLSFQPKNPSPSPATARVSVQDP-----PPPPSDANPSPGRSSNTSRYV 59

Query: 571 YLN 579
           ++N
Sbjct: 60  WVN 62


>02_04_0275 - 21469391-21470650
          Length = 419

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = +1

Query: 439 SRNTSPIPSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQ 564
           +R+T+P+  R  +P R +  +L  +  KR+ P P + +++++
Sbjct: 183 ARSTAPMAPRVNFPQRTRTQFLPSSGVKRRMPSPPQVSASSE 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,067,166
Number of Sequences: 37544
Number of extensions: 366473
Number of successful extensions: 1191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)