Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_A20
(844 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0884 + 20543084-20543638 33 0.22
07_03_0676 + 20618677-20618840,20618938-20619502 31 0.87
07_03_0600 + 19866757-19867218,19867920-19868429 31 0.87
04_04_0858 + 28800691-28801155,28801293-28801515,28802555-28803048 31 0.87
09_02_0622 - 11310941-11311472,11312776-11312813,11312875-113129... 31 1.5
07_01_0568 - 4216898-4216911,4216997-4217024,4217265-4217335,421... 31 1.5
04_03_1017 + 21747044-21748051 31 1.5
03_02_0045 - 5251234-5251305,5251362-5251419,5252256-5252539,525... 31 1.5
10_07_0053 - 12406958-12407011,12407012-12407168,12407280-124074... 30 2.0
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 30 2.0
02_05_0224 + 26948263-26948520,26948831-26948907,26949597-269496... 30 2.0
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 30 2.7
08_02_1148 - 24693323-24693877,24694092-24694315,24694519-246946... 29 3.5
04_04_0146 + 23106325-23108154 29 3.5
10_08_0062 + 14586613-14586966 29 4.6
07_03_0565 - 19561078-19561425,19562253-19563746 29 4.6
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547... 29 4.6
03_05_0738 + 27267514-27268279,27268373-27268395 29 4.6
01_06_1377 + 36764461-36765339 29 4.6
01_01_0012 + 71903-72935,73468-73981,74619-76008 29 4.6
12_01_0480 - 3776563-3777099 29 6.1
10_07_0034 - 12163944-12164537 29 6.1
09_04_0379 - 17094540-17094868,17095354-17095717 29 6.1
06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499 29 6.1
11_06_0535 - 24740950-24741089,24741358-24741451,24741535-247416... 28 8.1
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 28 8.1
10_05_0021 + 8118819-8119118 28 8.1
07_03_0675 + 20611460-20612053 28 8.1
05_04_0049 + 17497255-17497908 28 8.1
03_06_0340 + 33252677-33252864,33253086-33254442,33254565-332546... 28 8.1
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 28 8.1
>04_03_0884 + 20543084-20543638
Length = 184
Score = 33.5 bits (73), Expect = 0.22
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -3
Query: 470 GPPRVEPPRSNYTFAGAPFPPRAEVAT---PPVIGSERLRLQVPGWRPGEQ 327
GP + PPRS + A AP PP+ ++A S+R + + GW PGE+
Sbjct: 10 GPMAMAPPRSGHATAAAPPPPQHKMAMMMHMTFFWSDRAVVLIRGW-PGER 59
>07_03_0676 + 20618677-20618840,20618938-20619502
Length = 242
Score = 31.5 bits (68), Expect = 0.87
Identities = 40/117 (34%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Frame = -3
Query: 587 EGEASVVAAHPVRENR-ADRLDGSEAGRR--VCQAARPR-LQHGPPRVEPPRSNYTFAG- 423
+GEA AA R NR A R++G A R V +A R + P VE R + FAG
Sbjct: 75 DGEAG--AATAFRRNRGAARVEGGVAEPREVVATSAGARETRQWRPEVEQWRQRHCFAGE 132
Query: 422 --AP-FPPRAEVATP--PVIGSERLRLQVPGWRPGEQARRLEGDGAVSSDRPDRDRA 267
+P PR T V R + P P + RRLE GA + R+RA
Sbjct: 133 DASPVLSPRNGGLTEGEEVAARPREKTARPDGAPARRERRLEAAGAEEREGRRRERA 189
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 31.5 bits (68), Expect = 0.87
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = -3
Query: 500 CQAARPRLQH----GPPRVEPPRSNYTFAGAPFPPRAEVATPP 384
CQ +P H GPP PP+ G P PP + A PP
Sbjct: 43 CQQQQPLPPHYYQAGPPHAPPPQQPPAMWGQPPPPPPQYAPPP 85
>04_04_0858 + 28800691-28801155,28801293-28801515,28802555-28803048
Length = 393
Score = 31.5 bits (68), Expect = 0.87
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 238 DLQRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRS 372
++ R D SA + SGR + ++P+ S RR GRH G R+S
Sbjct: 107 EVNSRVDSCSAAAVSGRDDGSSPAMSPRRRSWEGRHAGGVAGRQS 151
>09_02_0622 -
11310941-11311472,11312776-11312813,11312875-11312926,
11313891-11314270
Length = 333
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 368 RLRLQVPG--WRPGEQARRLEGDGAVSSDRPDRDRALRTSQRRC 243
R R PG WR E A RL+G G S+D R R + C
Sbjct: 21 RWRRGGPGLAWRSAEAAGRLDGGGGASADATGRRRGSAAGSKGC 64
>07_01_0568 -
4216898-4216911,4216997-4217024,4217265-4217335,
4218026-4218140,4218245-4218314,4218552-4218646,
4219320-4219379,4219476-4219547,4219676-4219819
Length = 222
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 458 VEPPRSNYTFAGAPFPPRAEVATPP 384
+ PP + TFAGAP PP E PP
Sbjct: 2 ITPPVAGDTFAGAPPPPSQEEDAPP 26
>04_03_1017 + 21747044-21748051
Length = 335
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 265 SARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLP 378
S R+ + + T SP RRRA SP P T RR + P
Sbjct: 168 SRRAAASSPDYTPESPPRRRAASPDYSPSTPPRRAASP 205
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +1
Query: 265 SARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLP 378
S R S D +PS RRA SP P T RR + P
Sbjct: 196 STPPRRAASPDYSPSTPPRRAASPDYSPSTPPRRAASP 233
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 277 RSGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLP 378
R S D +PS RRA SP P T RR + P
Sbjct: 186 RRAASPDYSPSTPPRRAASPDYSPSTPPRRAASP 219
>03_02_0045 -
5251234-5251305,5251362-5251419,5252256-5252539,
5252836-5253019,5253564-5253814,5253921-5254024,
5254143-5254281
Length = 363
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 488 RPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGS 372
R RL+ G R+ P R + + A P PP ATPP G+
Sbjct: 10 RRRLRGGGHRLLPSRPSTSAASQPPPPPPSAATPPPPGA 48
>10_07_0053 -
12406958-12407011,12407012-12407168,12407280-12407410,
12407592-12407727,12407953-12408224,12408604-12408893,
12408984-12409285,12409359-12409424,12409506-12409571,
12409855-12409926,12410013-12410084,12410207-12410281,
12410367-12410438,12410531-12410663,12411556-12411655
Length = 665
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +1
Query: 298 TAPSPSRRRACSPGRHPGTWRRRRSLPITGGVATSALGG 414
TAP PSR R SPGRH S G+ A+ G
Sbjct: 237 TAPPPSRNRKKSPGRHSNGSGSSSSSGGNSGLRAGAIAG 275
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = -3
Query: 497 QAARPRLQHGP--PRVEPPRSNYTFAGAPFPPRAEVATPP 384
Q P L H P P + P A AP PPRA TPP
Sbjct: 161 QDPAPSLPHAPAPPPPQAPAPTPPQAPAPTPPRAPTPTPP 200
>02_05_0224 +
26948263-26948520,26948831-26948907,26949597-26949658,
26949797-26949915,26950326-26950493,26950587-26950619
Length = 238
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = -3
Query: 506 RVCQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVI 378
R A P PPR P GAP PPR A P++
Sbjct: 16 RTAAALSPFSSSAPPRHSPRILRAIPVGAPHPPRVSAAVSPLV 58
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 112 HCFNFSCLAGDYNDKKLVKQPLCFLMILVFCITIIK 219
HC+N S Y L P CF++ L F T+I+
Sbjct: 441 HCYNDSIYHHLYGQSDLFSSPHCFVLTLEFHFTMIR 476
>08_02_1148 -
24693323-24693877,24694092-24694315,24694519-24694636,
24694761-24695132,24696998-24697324
Length = 531
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = +1
Query: 289 SEDTAPSPSRRRACSPGRHPGTWRRRRSLPITGGVATSALGG 414
S D P SPG P WRRRR + G A S GG
Sbjct: 6 SSDLPPRAGAGAGASPG-WPQRWRRRRQRGVERGGAVSGGGG 46
>04_04_0146 + 23106325-23108154
Length = 609
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 467 PPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVP 348
P + PP +A P PP+A A P ++ + + L +P
Sbjct: 18 PAQAPPPSPRPWYAAPPPPPQAAAADPLLVAASEVALALP 57
>10_08_0062 + 14586613-14586966
Length = 117
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +1
Query: 304 PSPSRRRACSPGRHPGTWRRRRSLPITGGVATSALGGKGAPAKV*FER--GGSTLGGPCW 477
P+ RR S G G W RRR GG GG GA A+ + GG+ GG C
Sbjct: 3 PAGCMRR--SGGGLAGEWSRRRRRG-AGGAGAGCGGGDGAEAEAEADAGGGGAAEGGGCA 59
Query: 478 RRG 486
G
Sbjct: 60 SAG 62
>07_03_0565 - 19561078-19561425,19562253-19563746
Length = 613
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 310 PSRRRACSPGRHPGTWRRRR-SLPITGGVATSALGGKGAPAKV*FERGGSTLGGPCWR 480
P RR +P H T +RRR S+ + + A G+G F R +T GG W+
Sbjct: 385 PGRRSVAAPPSHMATPQRRRNSVDVPRRLPACASVGRGEGGV--FGRHATTTGGARWK 440
>04_04_0822 +
28352941-28353825,28353863-28354016,28354714-28354754,
28355060-28355310,28355411-28355591,28356138-28356323,
28356396-28356569,28356992-28357150,28357424-28357501,
28357612-28357748,28357980-28358044,28358115-28358148,
28358216-28358372,28359135-28359196,28360041-28360118,
28360940-28361042
Length = 914
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 515 AGRRVCQAARPRLQHGPP-RVEPPRSNYTFAGAPFPPRAEVA 393
AG+ RP+ QH PP R PPR ++ + P A V+
Sbjct: 83 AGKSTRVLNRPQRQHSPPGRALPPRESFRYNPKPAKAAAAVS 124
>03_05_0738 + 27267514-27268279,27268373-27268395
Length = 262
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 274 SRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLPITGGVATSAL 408
+R ++ P P R P +P W R LP GG A SA+
Sbjct: 40 TRQRHGQEPKPKPKPRARAKP--NPYDWAPPRVLPARGGAAASAV 82
>01_06_1377 + 36764461-36765339
Length = 292
Score = 29.1 bits (62), Expect = 4.6
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -3
Query: 533 RLDGSEAGR-RVCQAARPRLQHGP-PRVEPPRSNYTFAGAPFPPRAEVATPPVIGSER 366
R G G+ R+ A R R P P+ PP S+ + P PP PP GSE+
Sbjct: 135 RPSGRPQGKLRIRLALRERSPPPPEPQYPPPSSSPYYFPPPPPPAYSAPPPPQYGSEQ 192
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 265 SARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 369
+ + R + +PSPS RR+ S R P +RR R
Sbjct: 505 TVEEKDARGKSRSPSPSARRSKSRSRSPIKYRRSR 539
>12_01_0480 - 3776563-3777099
Length = 178
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +1
Query: 301 APSPSRRRACSPGRHPGTWRRRRSLPITGGVAT--SALGGKGAPAKV*FERGGSTLGGPC 474
+P+P R S R WRRRR GG A G G+PA E LG P
Sbjct: 7 SPAPERAGTPSERRRRWCWRRRRG----GGDARIGGGSGSAGSPAAEEDEAARPFLGMPG 62
Query: 475 W 477
W
Sbjct: 63 W 63
>10_07_0034 - 12163944-12164537
Length = 197
Score = 28.7 bits (61), Expect = 6.1
Identities = 39/117 (33%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Frame = -3
Query: 587 EGEASVVAAHPVRENR-ADRLDGSEAGRR--VCQAARPR-LQHGPPRVEPPRSNYTFAG- 423
+GEA AA R NR A ++G A R V +A R + P VE R + FAG
Sbjct: 12 DGEAG--AATAFRRNRGAAGVEGGVAEPREVVATSAGARETRQWRPEVEQWRQRHCFAGE 69
Query: 422 --AP-FPPRAEVATP--PVIGSERLRLQVPGWRPGEQARRLEGDGAVSSDRPDRDRA 267
+P PR T V R + P P + RRLE GA + R+RA
Sbjct: 70 DASPVLSPRNGGLTEGEEVAARPREKTARPDGAPARRERRLEAAGAEEREGRRRERA 126
>09_04_0379 - 17094540-17094868,17095354-17095717
Length = 230
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 595 VSRKVRHPWSRPTQSARTGRTASTVRRPADG 503
+ R++RH +PT AR G + +PA G
Sbjct: 179 IPRRIRHDLEKPTDGARAGGRKRGIGKPAFG 209
>06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499
Length = 524
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +1
Query: 280 SGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLPITGGVATSALGGKGAP 426
S + P P + AC+ H W SLP G AT + G+ AP
Sbjct: 336 SEEDKQNMPLPVQGPACNSSGHLAGWHTFNSLPFAGKTAT--VVGEAAP 382
>11_06_0535 -
24740950-24741089,24741358-24741451,24741535-24741690,
24741782-24741841,24741930-24742142,24742423-24742492,
24746129-24746463,24747616-24747647,24747749-24747776
Length = 375
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = -3
Query: 536 DRLDGSEAGRRVCQAARPRLQHGPPRV-EPPRSNYTFAGAPFPPRAEVA--TPPV-IGSE 369
+R D G ++ + AR + G P + + ++ F G+ F P A A TP + IG+
Sbjct: 145 NRPDWPLPGYKIAETAR---ELGIPIIADEVYAHMVFGGSKFVPMATFAHITPVITIGAL 201
Query: 368 RLRLQVPGWRPG 333
+ +PGWR G
Sbjct: 202 SKKFMLPGWRLG 213
>11_01_0315 -
2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 28.3 bits (60), Expect = 8.1
Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 3/104 (2%)
Frame = -3
Query: 683 SAQWGXAPSVPSGYXMQVPAETTMAXKHLR*PEGEASVVAAHPVRENRADRLDGSEAGRR 504
S +W G P + M + A V HP + A S
Sbjct: 387 SLKWSTGAGPRIGCVKDYPMQLRMQALEMIETVVAAVAVFPHPPSQRAAAAAGASRVPAI 446
Query: 503 VCQA-ARPRLQHGPPRVEPPR--SNYTFAGAPFPPRAEVATPPV 381
R R++ R+EPPR S+ F +P PP +PP+
Sbjct: 447 ASSPRGRRRIEGSGRRIEPPRPPSHRGFRPSPPPPGVAYNSPPL 490
>10_05_0021 + 8118819-8119118
Length = 99
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Frame = -3
Query: 584 GEASVVAAHPVRENRADRLDGSE--AGRRVCQAARPRLQH---GPPRVEPPRSNYTFAGA 420
G A+VV H +RE A G E AG RV A R + PP ++P +
Sbjct: 6 GAAAVVGFHRIREREAPVEAGEEKAAGGRVAAAVAARQRRPWWAPPDLDPLGQIWRLTAG 65
Query: 419 PFPPRAEVATPPVIG 375
RA P G
Sbjct: 66 TAGARAGTRAMPAAG 80
>07_03_0675 + 20611460-20612053
Length = 197
Score = 28.3 bits (60), Expect = 8.1
Identities = 39/117 (33%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Frame = -3
Query: 587 EGEASVVAAHPVRENR-ADRLDGSEAGRR--VCQAARPR-LQHGPPRVEPPRSNYTFAG- 423
+GEA AA R NR A ++G A R V +A R + P VE R + FAG
Sbjct: 12 DGEAG--AATVFRRNRGAAGVEGGVAEPREVVATSAGARETRQWRPEVEQWRQRHCFAGE 69
Query: 422 --AP-FPPRAEVATP--PVIGSERLRLQVPGWRPGEQARRLEGDGAVSSDRPDRDRA 267
+P PR T V R + P P + RRLE GA + R+RA
Sbjct: 70 NASPVLSPRNGGLTEGEEVAARPREKTARPDGAPARRERRLEAAGAEEREGRRRERA 126
>05_04_0049 + 17497255-17497908
Length = 217
Score = 28.3 bits (60), Expect = 8.1
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +1
Query: 289 SEDTAPSPSRRRACSPGRHPGTWRRRRSLPI--TGGVATSALGGKGAPAKV*FERGGSTL 462
S T +RRRA + GR+P RR R P TGGV +A + A ++ ERG
Sbjct: 47 SHSTLDLVARRRATAVGRNPRR-RRERETPTRETGGVTRAA--RREAASRERGERGDGD- 102
Query: 463 GGPCWRR 483
WRR
Sbjct: 103 DNRIWRR 109
>03_06_0340 +
33252677-33252864,33253086-33254442,33254565-33254667,
33256081-33256171,33257208-33257300,33258316-33258471,
33258583-33258655
Length = 686
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/61 (32%), Positives = 23/61 (37%)
Frame = +1
Query: 280 SGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLPITGGVATSALGGKGAPAKV*FERGGST 459
S ++ TAP RR PG G LP T G S L G G A F R
Sbjct: 9 SRTTQPTAPPLRPRRLAPPGEWNGPVLLLLLLPTTQGERNSTLVGFGLSAATGFSRSSDL 68
Query: 460 L 462
+
Sbjct: 69 M 69
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 265 SARSRSGRSE---DTAPSPSRRRACSPGRHPGTWRRRRS 372
S RSR S+ D+A SPS A SP R P R RS
Sbjct: 21 SRRSRDASSDPDPDSASSPSPSSASSPSRSPDRRSRSRS 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,632,427
Number of Sequences: 37544
Number of extensions: 415280
Number of successful extensions: 2125
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2113
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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