Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A17
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0367 - 28331479-28332358,28332432-28332988,28333454-283336...    30   2.7  
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204...    29   3.6  
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    29   4.7  
02_03_0099 + 15206282-15206917                                         29   6.2  
02_01_0679 - 5048653-5051394                                           29   6.2  
10_08_0827 + 20849312-20849833,20850352-20850417,20850786-208510...    28   8.2  
04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204     28   8.2  
03_05_0654 + 26479416-26479605,26480058-26480246,26480674-264809...    28   8.2  

>02_05_0367 -
           28331479-28332358,28332432-28332988,28333454-28333671,
           28333748-28333831,28334199-28334373,28334572-28334574
          Length = 638

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 535 LLRRMGCVS*KVPCGPRSGSEPDSFALRLH 624
           L+R +GC +  VPC P SG+E   F + L+
Sbjct: 173 LIRPVGCGTEHVPCEPHSGAELGIFYIALY 202


>04_04_1694 -
           35419278-35419565,35419744-35419861,35420404-35420490,
           35420909-35420931,35421647-35421843,35421964-35422159,
           35422382-35422481,35423288-35423374,35424053-35424282,
           35424678-35424763,35425148-35425271,35425415-35428573,
           35430014-35430019
          Length = 1566

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +2

Query: 302 KKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSE----GVEIVVADTDGSHLRP 469
           ++E+WSGA    SA  K KK  +    ++    DG  S       VEIV+     + L  
Sbjct: 619 QRELWSGATLINSAVKKTKKKSKRISDIDSTGLDGLHSESFMQPAVEIVL--NQETELAS 676

Query: 470 LDYSIGEKN 496
           ++ S  E N
Sbjct: 677 VELSFAENN 685


>11_06_0542 + 24777453-24777632,24777654-24778478,24778576-24779319,
            24779422-24780354,24780456-24780938,24780969-24781082,
            24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 594  GTGTRSTGNFLGYTPHSTK*APTTFPEVCLKG 499
            G GT S G+   YT H  K  P     +CL+G
Sbjct: 1004 GEGTPSNGDLPEYTSHCLKYRPKLLENLCLQG 1035


>02_03_0099 + 15206282-15206917
          Length = 211

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +2

Query: 284 SRVLLDKKEVWSGAGSATSAAFKV---KKGGRYQMQVELCNSDGCSSSEGVEIVVADTD 451
           +R++++  +  + A +ATS A      + GGRY + +   ++   S++E  E+VV + D
Sbjct: 38  ARLIVEAPDSAAPAAAATSLALAAAARRTGGRYALVLPDRDAAAASAAETAEVVVGEAD 96


>02_01_0679 - 5048653-5051394
          Length = 913

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 580 VHRELSRIHTPFDEVSAHHFSRSLLEGLIFLTNRIIERPQMATISVSY 437
           + REL  IH    +V    +S  +LEG I    ++  R +  T   SY
Sbjct: 43  IERELDMIHHFLSQVGTKIYSNKVLEGWIVRVRKVAYRVEDITDEYSY 90


>10_08_0827 +
           20849312-20849833,20850352-20850417,20850786-20851082,
           20851215-20851412,20851748-20851849,20851960-20852100,
           20852171-20852278,20852588-20852670,20852829-20852991,
           20853636-20853650,20853968-20854093
          Length = 606

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 560 PRKFPVDRVPVPNLTHLLYGFIPICGG 640
           P +F ++  PVPN T+  Y FIP  GG
Sbjct: 488 PERFDLEG-PVPNETNTEYRFIPFSGG 513


>04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204
          Length = 546

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -1

Query: 196 GRLVDFDDRERALAPAEVRFPWRAAGADGERGHREYERYHPMP 68
           GR  D DD  R   P   R+P   +G  G  G RE   +   P
Sbjct: 191 GRSDDIDDWSRDKKPMPSRYPSLGSGGGGGGGFRESPGFRDSP 233


>03_05_0654 +
           26479416-26479605,26480058-26480246,26480674-26480989,
           26481286-26481844
          Length = 417

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 704 SGREDFKVSIHDPWAALQKPQKGLSSWNEPYKGXFGQLM 820
           S  ED +VS H P  A  +     SSW  P  G  G+++
Sbjct: 350 SSPEDPRVSCHAPNMAQMQEDSISSSWEMPQGGPLGEIL 388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,010,412
Number of Sequences: 37544
Number of extensions: 463490
Number of successful extensions: 1432
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)