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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B03
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1747 + 29188568-29188715,29188793-29189541                       31   1.6  
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182...    30   2.7  
03_05_0292 + 22846273-22846377,22847161-22847823                       30   2.7  
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   3.6  
06_03_0197 + 17794418-17794771,17795040-17795549                       29   3.6  
08_02_0813 + 21459776-21461128                                         28   8.3  
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    28   8.3  
02_05_0266 + 27280592-27281668                                         28   8.3  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.3  
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892     28   8.3  

>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +2

Query: 374 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 526
           PPP TT++  V L TA +   S   +  QF+C+     TTC  + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260


>04_01_0159 -
           1824343-1824405,1824485-1824595,1825282-1825448,
           1825853-1826029,1826404-1826656
          Length = 256

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 405 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFXLRSNSVVCRSNS 256
           T + S    GGCS    +   PP AFRG+  +   P     + V CR+ S
Sbjct: 59  TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107


>03_05_0292 + 22846273-22846377,22847161-22847823
          Length = 255

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/47 (34%), Positives = 17/47 (36%)
 Frame = -1

Query: 821 RGTXNRXXGXV*GGGXXSXRGEPEARSXXGEHGAGXPAXXPGARFPE 681
           RG   R  G   GGG    RG   AR   G HG          R P+
Sbjct: 62  RGDGARDGGGARGGGGRGARGGGGARGGGGRHGGEAATGAEARRLPD 108


>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 233 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 144
           +GG  L    ++Q  G   Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


>06_03_0197 + 17794418-17794771,17795040-17795549
          Length = 287

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +1

Query: 520 SRMHNSDEMDFVIDKRIYSMFESGAWDVTDLSSAVXSQDRGEVGSSRGKCSRCLSGKRAP 699
           S + +SD+ +  ++ + +S    G+W      SA         GSSRG CS C   + A 
Sbjct: 220 SEVSDSDDHEHELNNKAFSFSRKGSWQGRAAGSAHCYPG---CGSSRGACSYC---RVAA 273

Query: 700 GXXAG 714
           G  AG
Sbjct: 274 GEEAG 278


>08_02_0813 + 21459776-21461128
          Length = 450

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 289 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 468
           +G++ C  WL +  R   P   LL+   TT      R  V+      W K+  IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288

Query: 469 QL 474
           +L
Sbjct: 289 EL 290


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 105 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 260
           +L   +D L+  YD+  PPDS+ V        HA      + +R+L  + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209


>02_05_0266 + 27280592-27281668
          Length = 358

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = +1

Query: 604 TDLSSAVXSQDRG---EVGSSRGKCSRCLSGKRAPGXXAGXPAPCSPXXLLASGSPRXLX 774
           +DL S + S+  G   E+G      S C S + A G  A  P P  P  LL S   R   
Sbjct: 7   SDLPSELLSEIAGGLVELGDIARFRSVCSSWRAAAGGAAAAPPPQPPWLLLPSSPSRLFF 66

Query: 775 XP 780
            P
Sbjct: 67  CP 68


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 403 GRGERSPRRWLQPRLAVPRQASTSVPRTP 317
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
          Length = 291

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 286 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPIS 465
           T G   CS++L    R+W     +++   +      LRA   +N S +    +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187

Query: 466 MQLDN 480
             LDN
Sbjct: 188 --LDN 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,481,129
Number of Sequences: 37544
Number of extensions: 602421
Number of successful extensions: 1824
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1821
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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