Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B01
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    32   0.50 
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    31   1.2  
03_05_0934 - 28935728-28935859,28936000-28936122,28936172-289362...    29   3.5  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    29   3.5  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   6.2  
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999...    29   6.2  

>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 133  GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLXELDS 285
            G+  PR +  D  EW N  PT+   ++ + +PRE     Q+ K  +  L+S
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFILNS 1443


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 157 LDDEAFGYL-KRVIVTPAVYPRLVEFLHVDIQSTGQEITL 41
           LDDE   YL  R  V   +  RL++F++VD  STG  + L
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTGSSVIL 318


>03_05_0934 -
           28935728-28935859,28936000-28936122,28936172-28936284,
           28936363-28936430,28936517-28936600,28936937-28936980,
           28937061-28937204,28937518-28937582,28937722-28937814,
           28938132-28938262,28938375-28938394,28938904-28938987,
           28939157-28939330,28940106-28940195,28940293-28940364,
           28941318-28941365,28941458-28941570,28942786-28942849,
           28942943-28943016,28943162-28943201
          Length = 591

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 370 ESSGFSATIARNDLPLMXHLSCLLTMPD*SQAQXGSSFPADSPKPVP 230
           + +GFS TI R+D  ++  L      P       G+  PA  P PVP
Sbjct: 301 DMAGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVP 347


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 550 PPQSNSPPGSVLEPDHAEVLNGDE 479
           P  +NS P +V +PD  ++LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 463 TTXHAWNETPCARRYY 416
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


>01_06_0116 -
           26595570-26596607,26596964-26598353,26599386-26599923,
           26600562-26601453
          Length = 1285

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -1

Query: 550 PPQSNSPPGSVLEPDHAEVLNG-DERFRHVT--TXHAWNETPCARRYYRPRTASAQ 392
           PP +    GS  +   +  L+   ER RH +  T HA  E P   R  RPRT+S +
Sbjct: 450 PPSAREQRGSADKSSGSGRLDALVERMRHGSKLTDHAKREIPYDERNIRPRTSSGR 505


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,570,628
Number of Sequences: 37544
Number of extensions: 325055
Number of successful extensions: 865
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)