Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A04
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399     29   4.7  
03_05_0183 - 21681673-21682524                                         29   4.7  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   4.7  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    29   6.2  
07_03_0414 + 17892133-17893590                                         28   8.1  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    28   8.1  
01_07_0101 + 41086735-41086809,41088634-41088721,41089727-410899...    28   8.1  
01_06_0456 + 29521282-29522064                                         28   8.1  

>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
          Length = 146

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +3

Query: 114 RTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 293
           R +   +R E    G +RR   L  D +RG+ +      A H     AG    + RG KP
Sbjct: 59  RCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGET-----ATHHGLRLAGREEVSPRGGKP 113

Query: 294 RVEQKGK 314
           RV+  G+
Sbjct: 114 RVDNGGR 120


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 442 SQAFIATLLFDPSMSALPIIAKQNSPS 522
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 381 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 488
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 155 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 244
           +KR  P K PA S S+ LPG + + G  SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368


>07_03_0414 + 17892133-17893590
          Length = 485

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = -3

Query: 662 QMSETAVPLVLSSITIATTSHQ*GKTNLSHDGLIPAHVPF*WVNNPTL-GEFCFAMIGRA 486
           Q   + V + L S+T+ +       T   H GL+ A  PF WV  P + G    A +  A
Sbjct: 279 QADGSVVYVSLGSLTVISLEQF---TEFLH-GLVAAGYPFLWVLRPDMVGASQSAALREA 334

Query: 485 DIEGSKSNVAMNAWLPQ 435
                KS   +  W PQ
Sbjct: 335 VAAAGKSKARVVEWAPQ 351


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 234 PPQSNSPPGSVLEPDHAGVLNGDE 163
           P  +NS P +V +PD   +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762


>01_07_0101 +
           41086735-41086809,41088634-41088721,41089727-41089923,
           41090077-41090266,41090469-41090860,41091390-41091965
          Length = 505

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 172 RRRAFPPRHHSARLERNTVRSSKPEFS 92
           RR    P HHS  L R   RSS+ E S
Sbjct: 406 RRSVRSPNHHSPDLRREAARSSRAEVS 432


>01_06_0456 + 29521282-29522064
          Length = 260

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 214 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER 125
           AW+C  P +G+RG  +RRR  P    S R  R
Sbjct: 12  AWRCYSPASGARGGSRRRRRRPAGTTSRRCSR 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,022,233
Number of Sequences: 37544
Number of extensions: 472207
Number of successful extensions: 1153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)