Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40036
(890 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 3e-09
SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0) 36 0.058
SB_4231| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_24638| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05) 29 5.1
SB_36412| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_17936| Best HMM Match : 7tm_1 (HMM E-Value=0.0002) 29 6.7
SB_49274| Best HMM Match : p450 (HMM E-Value=0) 28 8.8
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1565
Score = 59.7 bits (138), Expect = 3e-09
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +3
Query: 9 DLVVGMMAEKHLPGSLLGPTATSLFKEQLWRTRIADRYFYSHVNEAGSFSKRQLAELRRV 188
DL V +AE + G+ +GPT + + Q R R DR++Y + G F K QL E++++
Sbjct: 1138 DLWVSGLAENPVKGASVGPTFLCILRSQFRRLRDGDRFWYEN---NGVFGKEQLEEIKKI 1194
Query: 189 SLARLICDN-TDMKQLQRDVF 248
SL+R++CDN + +QRD F
Sbjct: 1195 SLSRVMCDNLPGIVSVQRDAF 1215
>SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)
Length = 1263
Score = 35.5 bits (78), Expect = 0.058
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 3 DIDLVVGMMAEKHLPGSLLGPTATSLFKEQLWRTRIADRYFYSH 134
D+DL VG +AE+H+ G +G T + Q R DR++Y +
Sbjct: 1134 DVDLWVGGLAEEHVEGGCVGETFARIIAMQFKVLRDGDRFWYEN 1177
>SB_4231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 33.5 bits (73), Expect = 0.23
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = -2
Query: 271 RVAIRSVSNTSLCSCFISVLSQINLASETLRSSASCRLEKLPAS 140
R+AIR V+ S+CS +++LSQ+ SET +ASC P S
Sbjct: 75 RIAIRLVACPSICSKALNMLSQLCPYSETDSDTASCNSGFSPIS 118
>SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 381 ITLSLIHLLVRARMSGPSTESCHASKLTFFISSHDTTGL 265
IT S H RA+ +GP K+ FF+ H T G+
Sbjct: 87 ITSSTAHAYSRAKWTGPELSRHRFRKVPFFVRPHSTKGV 125
>SB_24638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 260 DSNPVVSCEEIKKVNLEAWQDSVEGPDILARTNKWIKDKVIIGE 391
D V C +IK EA D VE + + N WI+D V+I E
Sbjct: 21 DCEAVSMCVKIKPY--EAVLDDVEKEGLKPKANIWIRDAVVISE 62
>SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05)
Length = 867
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 207 KLIWQAKPYVALPVVA*KNYQPRLRGCRNNGPRCEYATIV 88
+++ Q P ++P + +Q R+ N PRC+Y T++
Sbjct: 329 QIMKQVCPPNSIPQIIISRFQDRVHDVSRNKPRCKYTTVL 368
>SB_36412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 372
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 90 QLWRTRIADRYFYSHVNEAGSFSKRQLAELRRVSLARLICDNTDMKQL 233
Q WR R FYS + A + KR+ A L R++ ++ C NT Q+
Sbjct: 43 QKWRMRAP--LFYSFLLTACTARKRENATLSRLNKLKVTCSNTKALQV 88
>SB_17936| Best HMM Match : 7tm_1 (HMM E-Value=0.0002)
Length = 460
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 542 ILSSITINIGFTTKAAERVVLTIPCCKVAVISKWI 646
++SS+TIN F T A + I K + KWI
Sbjct: 105 VISSVTINASFLTLLALAIAQLISLYKPQIYEKWI 139
>SB_49274| Best HMM Match : p450 (HMM E-Value=0)
Length = 568
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 366 IHLLVRARMSGPSTESCHASKLTFFISSHDTTGLLSE 256
I+L R ESCHAS +T +SS TT + E
Sbjct: 310 IYLERRQTYENEEQESCHASAITKHLSSFMTTSHMEE 346
>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2708
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 90 QLWRTRIADRYFYSHVNEA--GSFSKRQLAELRRVSL 194
QL T IADR +VNEA +KR A+LR ++L
Sbjct: 2345 QLVTTVIADRSLVKNVNEAELSQIAKRMTADLRALAL 2381
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,610,994
Number of Sequences: 59808
Number of extensions: 605117
Number of successful extensions: 1538
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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